Gene name: UBX3
Reference locus (S288C): YDL091C
Gene biotype: protein_coding
Description: UBX domain-containing protein 3; Clathrin-coated vesicle component, regulator of endocytosis; copurifies with the DSC ubiquitin ligase complex; UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p; required for efficient clathrin-mediated endocytosis; ortholog of fission yeast Ucp10
Top 10 interactors (score): CDC48 (0.999); DSC2 (0.999); TUL1 (0.996); DSC3 (0.965); MVD1 (0.962); AVL9 (0.962); DTD1 (0.962); DER1 (0.953); UBX5 (0.941); HRD1 (0.911); NPL4 (0.904); UBX4 (0.873); UBX7 (0.844); SHP1 (0.813); UFD1 (0.805); OTU1 (0.775); YBL055C (0.745); DOA1 (0.741); OXR1 (0.724); HMS1 (0.71)
Homologues (species, bitscore): FAF2 (Homo sapiens, 98.6); Faf2 (Mus musculus, 97.4); faf2 (Danio rerio, 97.4); faf2 (Xenopus tropicalis, 96.3); Faf (Drosophila melanogaster, 87.0); ubxn-3 (Caenorhabditis elegans, 50.4); AT4G10790 (Arabidopsis thaliana, 91.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:278005-279372:- | gene-YDL091C_AKU4011 | rna-NM_001180150.1_AKU4011 | cds-NP_010192.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:270573-271940:+ | gene-YDL091C_BG1 | rna-NM_001180150.1_BG1 | cds-NP_010192.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:295676-297043:- | gene-YDL091C_Bruggeman | rna-NM_001180150.1_Bruggeman | cds-NP_010192.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:292164-293531:- | gene-YDL091C_CAT1 | rna-NM_001180150.1_CAT1 | cds-NP_010192.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:276277-277644:- | gene-YDL091C_CBS1585 | rna-NM_001180150.1_CBS1585 | cds-NP_010192.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:292942-294309:- | gene-YDL091C_CBS436 | rna-NM_001180150.1_CBS436 | cds-NP_010192.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:274705-276072:- | gene-YDL091C_CBS6412 | rna-NM_001180150.1_CBS6412 | cds-NP_010192.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:294330-295697:- | gene-YDL091C_CBS6413 | rna-NM_001180150.1_CBS6413 | cds-NP_010192.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:292213-293580:- | gene-YDL091C_CENPK1137D | rna-NM_001180150.1_CENPK1137D | cds-NP_010192.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:289040-290407:- | gene-YDL091C_EthanolRed | rna-NM_001180150.1_EthanolRed | cds-NP_010192.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:295012-296379:- | gene-YDL091C_FaliES1 | rna-NM_001180150.1_FaliES1 | cds-NP_010192.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:65061-66428:- | gene-YDL091C_JAY291 | rna-NM_001180150.1_JAY291 | cds-NP_010192.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:293190-294557:- | gene-YDL091C_MUCL30387 | rna-NM_001180150.1_MUCL30387 | cds-NP_010192.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:284216-285583:- | gene-YDL091C_MUCL30388 | rna-NM_001180150.1_MUCL30388 | cds-NP_010192.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:277382-278749:- | gene-YDL091C_MUCL39482 | rna-NM_001180150.1_MUCL39482 | cds-NP_010192.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:199393-200760:- | gene-YDL091C_MUCL42920 | rna-NM_001180150.1_MUCL42920 | cds-NP_010192.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:293315-294682:- | gene-YDL091C_NCIM3186 | rna-NM_001180150.1_NCIM3186 | cds-NP_010192.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:277397-278764:- | gene-YDL091C_NCYC1407 | rna-NM_001180150.1_NCYC1407 | cds-NP_010192.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:284178-285545:- | gene-YDL091C_PE2H3 | rna-NM_001180150.1_PE2H3 | cds-NP_010192.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:284177-285544:- | gene-YDL091C_PE2H4 | rna-NM_001180150.1_PE2H4 | cds-NP_010192.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:293392-294759:- | gene-YDL091C_S288C | rna-NM_001180150.1_S288C | cds-NP_010192.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:140160-141527:+ | gene-YDL091C_SA1 | rna-NM_001180150.1_SA1 | cds-NP_010192.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:294523-295890:- | gene-YDL091C_ThermosaccDry | rna-NM_001180150.1_ThermosaccDry | cds-NP_010192.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:296595-297962:- | gene-YDL091C_VR1 | rna-NM_001180150.1_VR1 | cds-NP_010192.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:292442-293809:- | gene-YDL091C_ZTW1 | rna-NM_001180150.1_ZTW1 | cds-NP_010192.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:294490-295857:- | gene-YDL091C_Sparadoxus | rna-NM_001180150.1_Sparadoxus | cds-NP_010192.1_Sparadoxus | 88.2 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |