Gene name: UBP9
Reference locus (S288C): YER098W
Gene biotype: protein_coding
Description: Ubiquitin carboxyl-terminal hydrolase 9/13; Ubiquitin-specific protease that cleaves ubiquitin-protein fusions; UBP9 has a paralog, UBP13, that arose from the whole genome duplication; Belongs to the peptidase C19 family
Top 10 interactors (score): DUF1 (0.999); OTU2 (0.948); UBP11 (0.946); UBP13 (0.925); UBP7 (0.922); UBP2 (0.894); UBP6 (0.891); OTU1 (0.876); RPN11 (0.718); YML096W (0.698); YUH1 (0.663); YGR130C (0.654); UFD4 (0.621); MST27 (0.617); RSP5 (0.607); SAD1 (0.607); MLF3 (0.593); MUD2 (0.577); MIG1 (0.567); UBI4 (0.534)
Homologues (species, bitscore): USP12 (Homo sapiens, 212.6); Usp12 (Mus musculus, 213.8); usp12a (Danio rerio, 211.5); usp46 (Xenopus tropicalis, 207.2); Usp12-46 (Drosophila melanogaster, 181.4); usp-46 (Caenorhabditis elegans, 184.5); UBP4 (Arabidopsis thaliana, 212.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:348851-351115:+ | gene-YER098W_AKU4011 | rna-NM_001178989.1_AKU4011 | cds-NP_011024.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:73995-76259:- | gene-YER098W_BG1 | rna-NM_001178989.1_BG1 | cds-NP_011024.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:359327-361591:+ | gene-YER098W_Bruggeman | rna-NM_001178989.1_Bruggeman | cds-NP_011024.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:353617-355881:+ | gene-YER098W_CAT1 | rna-NM_001178989.1_CAT1 | cds-NP_011024.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:348716-350980:+ | gene-YER098W_CBS1585 | rna-NM_001178989.1_CBS1585 | cds-NP_011024.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:351209-353473:+ | gene-YER098W_CBS436 | rna-NM_001178989.1_CBS436 | cds-NP_011024.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:348172-350436:+ | gene-YER098W_CBS6412 | rna-NM_001178989.1_CBS6412 | cds-NP_011024.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:354162-356426:+ | gene-YER098W_CBS6413 | rna-NM_001178989.1_CBS6413 | cds-NP_011024.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:353241-355505:+ | gene-YER098W_CENPK1137D | rna-NM_001178989.1_CENPK1137D | cds-NP_011024.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:349193-351457:+ | gene-YER098W_EthanolRed | rna-NM_001178989.1_EthanolRed | cds-NP_011024.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:349638-351902:+ | gene-YER098W_FaliES1 | rna-NM_001178989.1_FaliES1 | cds-NP_011024.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000356.1:5549-7813:- | gene-YER098W_JAY291 | rna-NM_001178989.1_JAY291 | cds-NP_011024.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:355207-357471:+ | gene-YER098W_MUCL30387 | rna-NM_001178989.1_MUCL30387 | cds-NP_011024.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:350752-353016:+ | gene-YER098W_MUCL30388 | rna-NM_001178989.1_MUCL30388 | cds-NP_011024.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:347740-350004:+ | gene-YER098W_MUCL39482 | rna-NM_001178989.1_MUCL39482 | cds-NP_011024.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:356242-358506:+ | gene-YER098W_MUCL42920 | rna-NM_001178989.1_MUCL42920 | cds-NP_011024.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:355465-357729:+ | gene-YER098W_NCIM3186 | rna-NM_001178989.1_NCIM3186 | cds-NP_011024.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:352803-355067:+ | gene-YER098W_NCYC1407 | rna-NM_001178989.1_NCYC1407 | cds-NP_011024.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:363842-366106:+ | gene-YER098W_PE2H3 | rna-NM_001178989.1_PE2H3 | cds-NP_011024.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:353783-356047:+ | gene-YER098W_PE2H4 | rna-NM_001178989.1_PE2H4 | cds-NP_011024.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:355466-357730:+ | gene-YER098W_S288C | rna-NM_001178989.1_S288C | cds-NP_011024.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:65086-67350:+ | gene-YER098W_SA1 | rna-NM_001178989.1_SA1 | cds-NP_011024.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:350435-352699:+ | gene-YER098W_ThermosaccDry | rna-NM_001178989.1_ThermosaccDry | cds-NP_011024.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:351484-353748:+ | gene-YER098W_VR1 | rna-NM_001178989.1_VR1 | cds-NP_011024.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:347604-349868:+ | gene-YER098W_ZTW1 | rna-NM_001178989.1_ZTW1 | cds-NP_011024.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:351542-353809:+ | gene-YER098W_Sparadoxus | rna-NM_001178989.1_Sparadoxus | cds-NP_011024.1_Sparadoxus | 87.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |