Gene name: UBP8
Reference locus (S288C): YMR223W
Gene biotype: protein_coding
Description: Ubiquitin carboxyl-terminal hydrolase 8; Ubiquitin-specific protease component of the SAGA acetylation complex; required for SAGA (Spt-Ada-Gcn5-Acetyltransferase)-mediated deubiquitination of histone H2B
Top 10 interactors (score): HFI1 (0.999); NGG1 (0.999); ADA2 (0.999); SGF29 (0.999); SPT3 (0.999); TAF5 (0.999); TAF6 (0.999); SGF11 (0.999); SUS1 (0.999); SPT8 (0.999); GCN5 (0.999); SPT20 (0.999); TRA1 (0.999); SGF73 (0.999); TAF12 (0.999); SPT7 (0.999); TAF10 (0.998); TAF9 (0.998); UBI4 (0.997); HTB1 (0.987)
Homologues (species, bitscore): USP22 (Homo sapiens, 211.1); Usp22 (Mus musculus, 211.8); usp22 (Danio rerio, 202.2); usp22 (Xenopus tropicalis, 207.6); not (Drosophila melanogaster, 214.5); usp-3 (Caenorhabditis elegans, 136.3); UBP22 (Arabidopsis thaliana, 189.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:756622-758037:+ | gene-YMR223W_AKU4011 | rna-NM_001182730.1_AKU4011 | cds-NP_013950.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:196571-197986:- | gene-YMR223W_BG1 | rna-NM_001182730.1_BG1 | cds-NP_013950.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:700849-702264:+ | gene-YMR223W_Bruggeman | rna-NM_001182730.1_Bruggeman | cds-NP_013950.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:704724-706139:+ | gene-YMR223W_CAT1 | rna-NM_001182730.1_CAT1 | cds-NP_013950.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:688882-690297:+ | gene-YMR223W_CBS1585 | rna-NM_001182730.1_CBS1585 | cds-NP_013950.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:693151-694566:+ | gene-YMR223W_CBS436 | rna-NM_001182730.1_CBS436 | cds-NP_013950.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:800444-801859:+ | gene-YMR223W_CBS6412 | rna-NM_001182730.1_CBS6412 | cds-NP_013950.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:688034-689449:+ | gene-YMR223W_CBS6413 | rna-NM_001182730.1_CBS6413 | cds-NP_013950.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:711458-712873:+ | gene-YMR223W_CENPK1137D | rna-NM_001182730.1_CENPK1137D | cds-NP_013950.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:749088-750503:+ | gene-YMR223W_EthanolRed | rna-NM_001182730.1_EthanolRed | cds-NP_013950.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:694740-696155:+ | gene-YMR223W_FaliES1 | rna-NM_001182730.1_FaliES1 | cds-NP_013950.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:89880-91295:- | gene-YMR223W_JAY291 | rna-NM_001182730.1_JAY291 | cds-NP_013950.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:694632-696047:+ | gene-YMR223W_MUCL30387 | rna-NM_001182730.1_MUCL30387 | cds-NP_013950.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:701860-703275:+ | gene-YMR223W_MUCL30388 | rna-NM_001182730.1_MUCL30388 | cds-NP_013950.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:689952-691367:+ | gene-YMR223W_MUCL39482 | rna-NM_001182730.1_MUCL39482 | cds-NP_013950.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:697296-698711:+ | gene-YMR223W_MUCL42920 | rna-NM_001182730.1_MUCL42920 | cds-NP_013950.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:716669-718084:+ | gene-YMR223W_NCIM3186 | rna-NM_001182730.1_NCIM3186 | cds-NP_013950.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:689609-691024:+ | gene-YMR223W_NCYC1407 | rna-NM_001182730.1_NCYC1407 | cds-NP_013950.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:699471-700886:+ | gene-YMR223W_PE2H3 | rna-NM_001182730.1_PE2H3 | cds-NP_013950.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:700486-701901:+ | gene-YMR223W_PE2H4 | rna-NM_001182730.1_PE2H4 | cds-NP_013950.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:716715-718130:+ | gene-YMR223W_S288C | rna-NM_001182730.1_S288C | cds-NP_013950.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:89995-91410:- | gene-YMR223W_SA1 | rna-NM_001182730.1_SA1 | cds-NP_013950.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:690911-692326:+ | gene-YMR223W_ThermosaccDry | rna-NM_001182730.1_ThermosaccDry | cds-NP_013950.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:703994-705409:+ | gene-YMR223W_VR1 | rna-NM_001182730.1_VR1 | cds-NP_013950.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:106616-108031:+ | gene-YMR223W_ZTW1 | rna-NM_001182730.1_ZTW1 | cds-NP_013950.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:708865-710280:+ | gene-YMR223W_Sparadoxus | rna-NM_001182730.1_Sparadoxus | cds-NP_013950.1_Sparadoxus | 92.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |