Gene name: UBP5
Reference locus (S288C): YER144C
Gene biotype: protein_coding
Description: Putative ubiquitin-specific protease; concentrates at the bud neck; UBP5 has a paralog, DOA4, that arose from the whole genome duplication; Belongs to the peptidase C19 family
Top 10 interactors (score): UBI4 (0.93); DOA4 (0.816); UBP2 (0.768); HSE1 (0.758); YCH1 (0.753); RDL1 (0.749); HOF1 (0.736); SNF7 (0.711); RDL2 (0.698); CAJ1 (0.69); UBP6 (0.687); GCD7 (0.659); VPS24 (0.656); CSM1 (0.645); SPG5 (0.616); YUH1 (0.616); DID4 (0.591); OTU1 (0.569); DUF1 (0.569); TUM1 (0.568)
Homologues (species, bitscore): USP8 (Homo sapiens, 200.3); Usp8 (Mus musculus, 204.1); usp8 (Danio rerio, 186.8); usp8 (Xenopus tropicalis, 204.9); Usp2 (Drosophila melanogaster, 185.7); E01B7.1 (Caenorhabditis elegans, 164.5); UBP11 (Arabidopsis thaliana, 112.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:445293-447710:- | gene-YER144C_AKU4011 | rna-NM_001179034.3_AKU4011 | cds-NP_011071.3_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000176.1:96898-99315:+ | gene-YER144C_BG1 | rna-NM_001179034.3_BG1 | cds-NP_011071.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:456578-458995:- | gene-YER144C_Bruggeman | rna-NM_001179034.3_Bruggeman | cds-NP_011071.3_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:444419-446836:- | gene-YER144C_CAT1 | rna-NM_001179034.3_CAT1 | cds-NP_011071.3_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:445111-447528:- | gene-YER144C_CBS1585 | rna-NM_001179034.3_CBS1585 | cds-NP_011071.3_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:448918-451335:- | gene-YER144C_CBS436 | rna-NM_001179034.3_CBS436 | cds-NP_011071.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:443614-446031:- | gene-YER144C_CBS6412 | rna-NM_001179034.3_CBS6412 | cds-NP_011071.3_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:451158-453575:- | gene-YER144C_CBS6413 | rna-NM_001179034.3_CBS6413 | cds-NP_011071.3_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:455579-457996:- | gene-YER144C_CENPK1137D | rna-NM_001179034.3_CENPK1137D | cds-NP_011071.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:451574-453991:- | gene-YER144C_EthanolRed | rna-NM_001179034.3_EthanolRed | cds-NP_011071.3_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:452160-454577:- | gene-YER144C_FaliES1 | rna-NM_001179034.3_FaliES1 | cds-NP_011071.3_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000111.1:31903-34320:+ | gene-YER144C_JAY291 | rna-NM_001179034.3_JAY291 | cds-NP_011071.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:445322-447739:- | gene-YER144C_MUCL30387 | rna-NM_001179034.3_MUCL30387 | cds-NP_011071.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:448212-450629:- | gene-YER144C_MUCL30388 | rna-NM_001179034.3_MUCL30388 | cds-NP_011071.3_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:441063-443480:- | gene-YER144C_MUCL39482 | rna-NM_001179034.3_MUCL39482 | cds-NP_011071.3_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:453139-455556:- | gene-YER144C_MUCL42920 | rna-NM_001179034.3_MUCL42920 | cds-NP_011071.3_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:457805-460222:- | gene-YER144C_NCIM3186 | rna-NM_001179034.3_NCIM3186 | cds-NP_011071.3_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:450522-452939:- | gene-YER144C_NCYC1407 | rna-NM_001179034.3_NCYC1407 | cds-NP_011071.3_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:466217-468634:- | gene-YER144C_PE2H3 | rna-NM_001179034.3_PE2H3 | cds-NP_011071.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:456158-458575:- | gene-YER144C_PE2H4 | rna-NM_001179034.3_PE2H4 | cds-NP_011071.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:457806-460223:- | gene-YER144C_S288C | rna-NM_001179034.3_S288C | cds-NP_011071.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000030.1:15688-18105:- | gene-YER144C_SA1 | rna-NM_001179034.3_SA1 | cds-NP_011071.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:452958-455375:- | gene-YER144C_ThermosaccDry | rna-NM_001179034.3_ThermosaccDry | cds-NP_011071.3_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:446081-448498:- | gene-YER144C_VR1 | rna-NM_001179034.3_VR1 | cds-NP_011071.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000010.1:7922-10338:- | gene-YER144C_ZTW1 | rna-NM_001179034.3_ZTW1 | cds-NP_011071.3_ZTW1 | 99.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:453811-456228:- | gene-YER144C_Sparadoxus | rna-NM_001179034.3_Sparadoxus | cds-NP_011071.3_Sparadoxus | 86.8 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |