Gene name: UBP16
Reference locus (S288C): YPL072W
Gene biotype: protein_coding
Description: Putative ubiquitin-specific protease ubp16; Ubiquitin carboxyl-terminal hydrolase 16; Deubiquitinating enzyme anchored to the outer mitochondrial membrane; probably not important for general mitochondrial functioning, but may perform a more specialized function at mitochondria; Belongs to the peptidase C19 family
Top 10 interactors (score): IRS4 (0.745); VPS68 (0.744); IRC25 (0.716); YHI9 (0.714); CUE2 (0.712); ADD66 (0.712); YJL120W (0.709); POC4 (0.697); TCD2 (0.697); PBA1 (0.697); WSS1 (0.696); HUL4 (0.618); VPS63 (0.616); RNY1 (0.612); ELA1 (0.571); CKB2 (0.566); YOR012W (0.526); YGR111W (0.526); SKP2 (0.526); VTA1 (0.499)
Homologues (species, bitscore): USP16 (Homo sapiens, 60.8); Usp8 (Mus musculus, 59.3); usp30 (Danio rerio, 57.8); usp30 (Xenopus tropicalis, 69.3); UBP27 (Arabidopsis thaliana, 62.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:396233-397732:+ | gene-YPL072W_AKU4011 | rna-NM_001183886.1_AKU4011 | cds-NP_015253.1_AKU4011 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:601914-603413:+ | gene-YPL072W_BG1 | rna-NM_001183886.1_BG1 | cds-NP_015253.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:472561-474060:+ | gene-YPL072W_Bruggeman | rna-NM_001183886.1_Bruggeman | cds-NP_015253.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:512921-514420:+ | gene-YPL072W_CAT1 | rna-NM_001183886.1_CAT1 | cds-NP_015253.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:400306-401805:+ | gene-YPL072W_CBS1585 | rna-NM_001183886.1_CBS1585 | cds-NP_015253.1_CBS1585 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:414865-416364:+ | gene-YPL072W_CBS436 | rna-NM_001183886.1_CBS436 | cds-NP_015253.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:404495-405994:+ | gene-YPL072W_CBS6412 | rna-NM_001183886.1_CBS6412 | cds-NP_015253.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:396858-398357:+ | gene-YPL072W_CBS6413 | rna-NM_001183886.1_CBS6413 | cds-NP_015253.1_CBS6413 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:418481-419980:+ | gene-YPL072W_CENPK1137D | rna-NM_001183886.1_CENPK1137D | cds-NP_015253.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:394600-396099:+ | gene-YPL072W_EthanolRed | rna-NM_001183886.1_EthanolRed | cds-NP_015253.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:402430-403929:+ | gene-YPL072W_FaliES1 | rna-NM_001183886.1_FaliES1 | cds-NP_015253.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:11033-12532:+ | gene-YPL072W_JAY291 | rna-NM_001183886.1_JAY291 | cds-NP_015253.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:413391-414890:+ | gene-YPL072W_MUCL30387 | rna-NM_001183886.1_MUCL30387 | cds-NP_015253.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:412478-413977:+ | gene-YPL072W_MUCL30388 | rna-NM_001183886.1_MUCL30388 | cds-NP_015253.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:393635-395134:+ | gene-YPL072W_MUCL39482 | rna-NM_001183886.1_MUCL39482 | cds-NP_015253.1_MUCL39482 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:451499-452998:+ | gene-YPL072W_MUCL42920 | rna-NM_001183886.1_MUCL42920 | cds-NP_015253.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:418495-419994:+ | gene-YPL072W_NCIM3186 | rna-NM_001183886.1_NCIM3186 | cds-NP_015253.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:400242-401741:+ | gene-YPL072W_NCYC1407 | rna-NM_001183886.1_NCYC1407 | cds-NP_015253.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:407525-409024:+ | gene-YPL072W_PE2H3 | rna-NM_001183886.1_PE2H3 | cds-NP_015253.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:407148-408647:+ | gene-YPL072W_PE2H4 | rna-NM_001183886.1_PE2H4 | cds-NP_015253.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:418512-420011:+ | gene-YPL072W_S288C | rna-NM_001183886.1_S288C | cds-NP_015253.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000057.1:40623-42122:+ | gene-YPL072W_SA1 | rna-NM_001183886.1_SA1 | cds-NP_015253.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:402230-403729:+ | gene-YPL072W_ThermosaccDry | rna-NM_001183886.1_ThermosaccDry | cds-NP_015253.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:417234-418733:+ | gene-YPL072W_VR1 | rna-NM_001183886.1_VR1 | cds-NP_015253.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:401540-403039:+ | gene-YPL072W_ZTW1 | rna-NM_001183886.1_ZTW1 | cds-NP_015253.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:403246-404749:+ | gene-YPL072W_Sparadoxus | rna-NM_001183886.1_Sparadoxus | cds-NP_015253.1_Sparadoxus | 82.6 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |