Gene name: UBP13
Reference locus (S288C): YBL067C
Gene biotype: protein_coding
Description: Ubiquitin carboxyl-terminal hydrolase 9/13; Ubiquitin-specific protease that cleaves Ub-protein fusions; UBP13 has a paralog, UBP9, that arose from the whole genome duplication; Belongs to the peptidase C19 family
Top 10 interactors (score): DUF1 (0.999); UBP11 (0.939); UBP7 (0.938); UBP9 (0.925); UBP6 (0.807); UBP1 (0.722); UBP2 (0.718); PMD1 (0.712); MRPL24 (0.696); RSP5 (0.675); POC4 (0.67); UBI4 (0.666); YUH1 (0.663); UIP4 (0.651); RPN11 (0.647); UFD4 (0.621); SAD1 (0.607); MUD2 (0.577); RFU1 (0.574); MRPL40 (0.573)
Homologues (species, bitscore): USP46 (Homo sapiens, 211.8); Usp46 (Mus musculus, 211.8); usp12a (Danio rerio, 207.6); usp46 (Xenopus tropicalis, 202.2); Usp12-46 (Drosophila melanogaster, 183.3); usp-46 (Caenorhabditis elegans, 194.1); UBP4 (Arabidopsis thaliana, 228.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:87220-89463:- | gene-YBL067C_AKU4011 | rna-NM_001178307.2_AKU4011 | cds-NP_009486.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:78078-80321:- | gene-YBL067C_BG1 | rna-NM_001178307.2_BG1 | cds-NP_009486.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:87835-90078:- | gene-YBL067C_Bruggeman | rna-NM_001178307.2_Bruggeman | cds-NP_009486.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:90472-92715:- | gene-YBL067C_CAT1 | rna-NM_001178307.2_CAT1 | cds-NP_009486.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:79787-82030:- | gene-YBL067C_CBS1585 | rna-NM_001178307.2_CBS1585 | cds-NP_009486.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:88293-90536:- | gene-YBL067C_CBS436 | rna-NM_001178307.2_CBS436 | cds-NP_009486.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:78293-80536:- | gene-YBL067C_CBS6412 | rna-NM_001178307.2_CBS6412 | cds-NP_009486.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:85365-87608:- | gene-YBL067C_CBS6413 | rna-NM_001178307.2_CBS6413 | cds-NP_009486.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:87398-89641:- | gene-YBL067C_CENPK1137D | rna-NM_001178307.2_CENPK1137D | cds-NP_009486.3_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:101218-103461:- | gene-YBL067C_EthanolRed | rna-NM_001178307.2_EthanolRed | cds-NP_009486.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:102071-104314:- | gene-YBL067C_FaliES1 | rna-NM_001178307.2_FaliES1 | cds-NP_009486.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000072.1:4692-6935:- | gene-YBL067C_JAY291 | rna-NM_001178307.2_JAY291 | cds-NP_009486.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:87209-89452:- | gene-YBL067C_MUCL30387 | rna-NM_001178307.2_MUCL30387 | cds-NP_009486.3_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:88488-90731:- | gene-YBL067C_MUCL30388 | rna-NM_001178307.2_MUCL30388 | cds-NP_009486.3_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:79968-82211:- | gene-YBL067C_MUCL39482 | rna-NM_001178307.2_MUCL39482 | cds-NP_009486.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:86804-89047:- | gene-YBL067C_MUCL42920 | rna-NM_001178307.2_MUCL42920 | cds-NP_009486.3_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:93436-95679:- | gene-YBL067C_NCIM3186 | rna-NM_001178307.2_NCIM3186 | cds-NP_009486.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:81110-83353:- | gene-YBL067C_NCYC1407 | rna-NM_001178307.2_NCYC1407 | cds-NP_009486.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:87367-89610:- | gene-YBL067C_PE2H3 | rna-NM_001178307.2_PE2H3 | cds-NP_009486.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:85011-87254:- | gene-YBL067C_PE2H4 | rna-NM_001178307.2_PE2H4 | cds-NP_009486.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:93639-95882:- | gene-YBL067C_S288C | rna-NM_001178307.2_S288C | cds-NP_009486.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:77746-79989:- | gene-YBL067C_SA1 | rna-NM_001178307.2_SA1 | cds-NP_009486.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:102032-104275:- | gene-YBL067C_ThermosaccDry | rna-NM_001178307.2_ThermosaccDry | cds-NP_009486.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:84199-86442:- | gene-YBL067C_VR1 | rna-NM_001178307.2_VR1 | cds-NP_009486.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:78750-80993:- | gene-YBL067C_ZTW1 | rna-NM_001178307.2_ZTW1 | cds-NP_009486.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:113426-115669:- | gene-YBL067C_Sparadoxus | rna-NM_001178307.2_Sparadoxus | cds-NP_009486.3_Sparadoxus | 89.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |