Gene name: UBP12
Reference locus (S288C): YJL197W
Gene biotype: protein_coding
Description: Ubiquitin carboxyl-terminal hydrolase 12; Ubiquitin-specific protease; cleaves ubiquitin from ubiquitinated proteins; present in the nucleus and cytoplasm; Belongs to the peptidase C19 family
Top 10 interactors (score): UBP2 (0.975); RRI1 (0.926); UBP6 (0.924); SCH9 (0.905); YPK1 (0.904); PRP24 (0.888); UBP3 (0.859); OTU2 (0.825); CDC48 (0.814); MDM30 (0.813); FZO1 (0.801); ARF3 (0.757); UBP1 (0.73); YUH1 (0.719); RPN11 (0.716); SAD1 (0.712); OTU1 (0.711); CUL3 (0.696); RAD23 (0.659); RSP5 (0.654)
Homologues (species, bitscore): USP15 (Homo sapiens, 355.5); Usp15 (Mus musculus, 354.0); usp4 (Danio rerio, 389.0); usp4 (Xenopus tropicalis, 355.5); H34C03.2 (Caenorhabditis elegans, 256.9); UBP10 (Arabidopsis thaliana, 337.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:52204-55968:+ | gene-YJL197W_AKU4011 | rna-NM_001181630.1_AKU4011 | cds-NP_012338.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000181.1:29484-33248:+ | gene-YJL197W_BG1 | rna-NM_001181630.1_BG1 | cds-NP_012338.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:64015-67779:+ | gene-YJL197W_Bruggeman | rna-NM_001181630.1_Bruggeman | cds-NP_012338.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:67225-70989:+ | gene-YJL197W_CAT1 | rna-NM_001181630.1_CAT1 | cds-NP_012338.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:57839-61603:+ | gene-YJL197W_CBS1585 | rna-NM_001181630.1_CBS1585 | cds-NP_012338.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:82586-86350:+ | gene-YJL197W_CBS436 | rna-NM_001181630.1_CBS436 | cds-NP_012338.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:54321-58085:+ | gene-YJL197W_CBS6412 | rna-NM_001181630.1_CBS6412 | cds-NP_012338.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:55314-59078:+ | gene-YJL197W_CBS6413 | rna-NM_001181630.1_CBS6413 | cds-NP_012338.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:46270-50034:+ | gene-YJL197W_CENPK1137D | rna-NM_001181630.1_CENPK1137D | cds-NP_012338.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:56502-60266:+ | gene-YJL197W_EthanolRed | rna-NM_001181630.1_EthanolRed | cds-NP_012338.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:61780-65544:+ | gene-YJL197W_FaliES1 | rna-NM_001181630.1_FaliES1 | cds-NP_012338.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000164.1:53204-56968:- | gene-YJL197W_JAY291 | rna-NM_001181630.1_JAY291 | cds-NP_012338.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:65749-69513:+ | gene-YJL197W_MUCL30387 | rna-NM_001181630.1_MUCL30387 | cds-NP_012338.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:61904-65668:+ | gene-YJL197W_MUCL30388 | rna-NM_001181630.1_MUCL30388 | cds-NP_012338.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:56580-60344:+ | gene-YJL197W_MUCL39482 | rna-NM_001181630.1_MUCL39482 | cds-NP_012338.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:61175-64939:+ | gene-YJL197W_MUCL42920 | rna-NM_001181630.1_MUCL42920 | cds-NP_012338.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:63784-67548:+ | gene-YJL197W_NCIM3186 | rna-NM_001181630.1_NCIM3186 | cds-NP_012338.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:55191-58955:+ | gene-YJL197W_NCYC1407 | rna-NM_001181630.1_NCYC1407 | cds-NP_012338.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:67884-71648:+ | gene-YJL197W_PE2H3 | rna-NM_001181630.1_PE2H3 | cds-NP_012338.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:67523-71287:+ | gene-YJL197W_PE2H4 | rna-NM_001181630.1_PE2H4 | cds-NP_012338.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:63805-67569:+ | gene-YJL197W_S288C | rna-NM_001181630.1_S288C | cds-NP_012338.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000022.1:86314-90078:- | gene-YJL197W_SA1 | rna-NM_001181630.1_SA1 | cds-NP_012338.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:54974-58738:+ | gene-YJL197W_ThermosaccDry | rna-NM_001181630.1_ThermosaccDry | cds-NP_012338.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:61843-65607:+ | gene-YJL197W_VR1 | rna-NM_001181630.1_VR1 | cds-NP_012338.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:42559-46323:+ | gene-YJL197W_ZTW1 | rna-NM_001181630.1_ZTW1 | cds-NP_012338.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:66862-70626:+ | gene-YJL197W_Sparadoxus | rna-NM_001181630.1_Sparadoxus | cds-NP_012338.1_Sparadoxus | 88.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |