Gene name: UBP11
Reference locus (S288C): YKR098C
Gene biotype: protein_coding
Description: Ubiquitin carboxyl-terminal hydrolase 11; Ubiquitin-specific protease; cleaves ubiquitin from ubiquitinated proteins; UBP11 has a paralog, UBP7, that arose from the whole genome duplication
Top 10 interactors (score): UBP9 (0.946); UBP13 (0.939); UBP7 (0.909); DUF1 (0.752); BUL1 (0.746); CAJ1 (0.697); SPG5 (0.657); RSP5 (0.633); UBP3 (0.62); MMP1 (0.619); STP22 (0.58); POC4 (0.565); UBP14 (0.555); UBP6 (0.532); BAP3 (0.526); UBI4 (0.521); SEM1 (0.517); HUL5 (0.517); YUH1 (0.515); ATG1 (0.503)
Homologues (species, bitscore): USP21 (Homo sapiens, 131.7); Usp21 (Mus musculus, 132.5); usp2a (Danio rerio, 123.2); usp2 (Xenopus tropicalis, 131.7); Usp8 (Drosophila melanogaster, 120.2); E01B7.1 (Caenorhabditis elegans, 95.1); UBP11 (Arabidopsis thaliana, 86.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:618969-621122:- | gene-YKR098C_AKU4011 | rna-NM_001179888.1_AKU4011 | cds-NP_013024.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:22972-25125:+ | gene-YKR098C_BG1 | rna-NM_001179888.1_BG1 | cds-NP_013024.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:641587-643740:- | gene-YKR098C_Bruggeman | rna-NM_001179888.1_Bruggeman | cds-NP_013024.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:639122-641275:- | gene-YKR098C_CAT1 | rna-NM_001179888.1_CAT1 | cds-NP_013024.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:631457-633610:- | gene-YKR098C_CBS1585 | rna-NM_001179888.1_CBS1585 | cds-NP_013024.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:629863-632016:- | gene-YKR098C_CBS436 | rna-NM_001179888.1_CBS436 | cds-NP_013024.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:614747-616900:- | gene-YKR098C_CBS6412 | rna-NM_001179888.1_CBS6412 | cds-NP_013024.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:631277-633430:- | gene-YKR098C_CBS6413 | rna-NM_001179888.1_CBS6413 | cds-NP_013024.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:632682-634835:- | gene-YKR098C_CENPK1137D | rna-NM_001179888.1_CENPK1137D | cds-NP_013024.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:628863-631016:- | gene-YKR098C_EthanolRed | rna-NM_001179888.1_EthanolRed | cds-NP_013024.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:632759-634912:- | gene-YKR098C_FaliES1 | rna-NM_001179888.1_FaliES1 | cds-NP_013024.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000426.1:10058-12210:+ | gene-YKR098C_JAY291 | rna-NM_001179888.1_JAY291 | cds-NP_013024.1_JAY291 | 99.4 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:641098-643251:- | gene-YKR098C_MUCL30387 | rna-NM_001179888.1_MUCL30387 | cds-NP_013024.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:635409-637562:- | gene-YKR098C_MUCL30388 | rna-NM_001179888.1_MUCL30388 | cds-NP_013024.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:630296-632449:- | gene-YKR098C_MUCL39482 | rna-NM_001179888.1_MUCL39482 | cds-NP_013024.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:636354-638507:- | gene-YKR098C_MUCL42920 | rna-NM_001179888.1_MUCL42920 | cds-NP_013024.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:633015-635168:- | gene-YKR098C_NCIM3186 | rna-NM_001179888.1_NCIM3186 | cds-NP_013024.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:630713-632866:- | gene-YKR098C_NCYC1407 | rna-NM_001179888.1_NCYC1407 | cds-NP_013024.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:655966-658119:- | gene-YKR098C_PE2H3 | rna-NM_001179888.1_PE2H3 | cds-NP_013024.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:640403-642556:- | gene-YKR098C_PE2H4 | rna-NM_001179888.1_PE2H4 | cds-NP_013024.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:633026-635179:- | gene-YKR098C_S288C | rna-NM_001179888.1_S288C | cds-NP_013024.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000029.1:46556-48709:+ | gene-YKR098C_SA1 | rna-NM_001179888.1_SA1 | cds-NP_013024.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:632005-634158:- | gene-YKR098C_ThermosaccDry | rna-NM_001179888.1_ThermosaccDry | cds-NP_013024.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:631290-633443:- | gene-YKR098C_VR1 | rna-NM_001179888.1_VR1 | cds-NP_013024.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:628967-631120:- | gene-YKR098C_ZTW1 | rna-NM_001179888.1_ZTW1 | cds-NP_013024.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:654333-656501:- | gene-YKR098C_Sparadoxus | rna-NM_001179888.1_Sparadoxus | cds-NP_013024.1_Sparadoxus | 86.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |