Gene name: UBP1
Reference locus (S288C): YDL122W
Gene biotype: protein_coding
Description: Ubiquitin carboxyl-terminal hydrolase 1; Ubiquitin-specific protease; removes ubiquitin from ubiquitinated proteins; cleaves at the C terminus of ubiquitin fusions irrespective of their size; capable of cleaving polyubiquitin chains
Top 10 interactors (score): TRA1 (0.975); RPS31 (0.962); UBP2 (0.902); YUH1 (0.886); SPT3 (0.83); RPL40B (0.825); UBP14 (0.825); SGF73 (0.815); OTU2 (0.811); UBI4 (0.793); SGF11 (0.787); SPT20 (0.768); UBP3 (0.764); RPL40A (0.743); UBP12 (0.73); UBP7 (0.727); UBP13 (0.722); SGF29 (0.72); UBP6 (0.697); HFI1 (0.694)
Homologues (species, bitscore): USP30 (Homo sapiens, 60.8); Usp30 (Mus musculus, 65.5); usp30 (Danio rerio, 64.7); usp30 (Xenopus tropicalis, 63.5); Usp8 (Drosophila melanogaster, 51.6); usp-3 (Caenorhabditis elegans, 53.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:227170-229605:+ | gene-YDL122W_AKU4011 | rna-NM_001180181.1_AKU4011 | cds-NP_010161.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:320346-322775:- | gene-YDL122W_BG1 | rna-NM_001180181.1_BG1 | cds-NP_010161.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:244585-247014:+ | gene-YDL122W_Bruggeman | rna-NM_001180181.1_Bruggeman | cds-NP_010161.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:241321-243756:+ | gene-YDL122W_CAT1 | rna-NM_001180181.1_CAT1 | cds-NP_010161.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:225431-227866:+ | gene-YDL122W_CBS1585 | rna-NM_001180181.1_CBS1585 | cds-NP_010161.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:242094-244523:+ | gene-YDL122W_CBS436 | rna-NM_001180181.1_CBS436 | cds-NP_010161.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:223856-226291:+ | gene-YDL122W_CBS6412 | rna-NM_001180181.1_CBS6412 | cds-NP_010161.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:243591-246026:+ | gene-YDL122W_CBS6413 | rna-NM_001180181.1_CBS6413 | cds-NP_010161.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:241324-243753:+ | gene-YDL122W_CENPK1137D | rna-NM_001180181.1_CENPK1137D | cds-NP_010161.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:238195-240630:+ | gene-YDL122W_EthanolRed | rna-NM_001180181.1_EthanolRed | cds-NP_010161.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:244165-246600:+ | gene-YDL122W_FaliES1 | rna-NM_001180181.1_FaliES1 | cds-NP_010161.1_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:14216-16645:+ | gene-YDL122W_JAY291 | rna-NM_001180181.1_JAY291 | cds-NP_010161.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:242372-244801:+ | gene-YDL122W_MUCL30387 | rna-NM_001180181.1_MUCL30387 | cds-NP_010161.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:233130-235559:+ | gene-YDL122W_MUCL30388 | rna-NM_001180181.1_MUCL30388 | cds-NP_010161.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:226535-228970:+ | gene-YDL122W_MUCL39482 | rna-NM_001180181.1_MUCL39482 | cds-NP_010161.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:148324-150753:+ | gene-YDL122W_MUCL42920 | rna-NM_001180181.1_MUCL42920 | cds-NP_010161.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:242475-244904:+ | gene-YDL122W_NCIM3186 | rna-NM_001180181.1_NCIM3186 | cds-NP_010161.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:226564-228999:+ | gene-YDL122W_NCYC1407 | rna-NM_001180181.1_NCYC1407 | cds-NP_010161.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:233320-235755:+ | gene-YDL122W_PE2H3 | rna-NM_001180181.1_PE2H3 | cds-NP_010161.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:233324-235759:+ | gene-YDL122W_PE2H4 | rna-NM_001180181.1_PE2H4 | cds-NP_010161.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:242552-244981:+ | gene-YDL122W_S288C | rna-NM_001180181.1_S288C | cds-NP_010161.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:189934-192345:- | gene-YDL122W_SA1 | rna-NM_001180181.1_SA1 | cds-NP_010161.1_SA1 | 98.4 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:243676-246111:+ | gene-YDL122W_ThermosaccDry | rna-NM_001180181.1_ThermosaccDry | cds-NP_010161.1_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:245782-248217:+ | gene-YDL122W_VR1 | rna-NM_001180181.1_VR1 | cds-NP_010161.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:241605-244040:+ | gene-YDL122W_ZTW1 | rna-NM_001180181.1_ZTW1 | cds-NP_010161.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:243732-246137:+ | gene-YDL122W_Sparadoxus | rna-NM_001180181.1_Sparadoxus | cds-NP_010161.1_Sparadoxus | 89.0 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |