Gene name: UBI4
Reference locus (S288C): YLL039C
Gene biotype: protein_coding
Description: Polyubiquitin; Ubiquitin; becomes conjugated to proteins, marking them for selective degradation via the ubiquitin-26S proteasome system; essential for the cellular stress response; encoded as a polyubiquitin precursor comprised of 5 head-to-tail repeats; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): RPS31 (0.999); UBC1 (0.999); UBP6 (0.999); RPN10 (0.999); UBC13 (0.999); VPS27 (0.999); UBA1 (0.999); CDC48 (0.998); RAD23 (0.998); RPL40A (0.998); YUH1 (0.998); UBP8 (0.997); RPN11 (0.997); DSK2 (0.996); RSP5 (0.996); MMS2 (0.995); DOA1 (0.994); RPN1 (0.994); STP22 (0.994); CDC34 (0.994)
Homologues (species, bitscore): UBC (Homo sapiens, 725.7); Ubc (Mus musculus, 726.5); UBC (Danio rerio, 725.7); ubb (Xenopus tropicalis, 719.5); Ubi-p63E (Drosophila melanogaster, 726.1); ubq-1 (Caenorhabditis elegans, 733.4); UBQ4 (Arabidopsis thaliana, 740.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:51217-52362:- | gene-YLL039C_AKU4011 | rna-NM_001181859.1_AKU4011 | cds-NP_013061.1_AKU4011 | 98.4 | 99.8 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:15158-16303:- | gene-YLL039C_BG1 | rna-NM_001181859.1_BG1 | cds-NP_013061.1_BG1 | 98.4 | 99.8 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:61113-62363:- | gene-YLL039C_Bruggeman | rna-NM_001181859.1_Bruggeman | cds-NP_013061.1_Bruggeman | 86.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:62096-63241:- | gene-YLL039C_CAT1 | rna-NM_001181859.1_CAT1 | cds-NP_013061.1_CAT1 | 98.4 | 99.8 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | MBVS01000008.1:1-914:+ | gene-YLL039C_CBS1585 | rna-NM_001181859.1_CBS1585 | cds-NP_013061.1_CBS1585 | 78.0 | 79.7 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:49117-50262:- | gene-YLL039C_CBS436 | rna-NM_001181859.1_CBS436 | cds-NP_013061.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:58787-59932:- | gene-YLL039C_CBS6412 | rna-NM_001181859.1_CBS6412 | cds-NP_013061.1_CBS6412 | 98.4 | 99.8 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:58913-60058:- | gene-YLL039C_CBS6413 | rna-NM_001181859.1_CBS6413 | cds-NP_013061.1_CBS6413 | 98.4 | 99.8 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:49042-50214:- | gene-YLL039C_CENPK1137D | rna-NM_001181859.1_CENPK1137D | cds-NP_013061.1_CENPK1137D | 84.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:51842-52927:- | gene-YLL039C_EthanolRed | rna-NM_001181859.1_EthanolRed | cds-NP_013061.1_EthanolRed | 86.0 | 93.5 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:51155-52240:- | gene-YLL039C_FaliES1 | rna-NM_001181859.1_FaliES1 | cds-NP_013061.1_FaliES1 | 86.0 | 93.5 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000145.1:16163-16572:- | gene-YLL039C_JAY291 | rna-NM_001181859.1_JAY291 | cds-NP_013061.1_JAY291 | 35.6 | 35.7 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:58870-60024:- | gene-YLL039C_MUCL30387 | rna-NM_001181859.1_MUCL30387 | cds-NP_013061.1_MUCL30387 | 88.7 | 98.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:63082-64748:- | gene-YLL039C_MUCL30388 | rna-NM_001181859.1_MUCL30388 | cds-NP_013061.1_MUCL30388 | 67.3 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:59126-60271:- | gene-YLL039C_MUCL39482 | rna-NM_001181859.1_MUCL39482 | cds-NP_013061.1_MUCL39482 | 95.3 | 99.6 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000228.1:68-765:- | gene-YLL039C_MUCL42920 | rna-NM_001181859.1_MUCL42920 | cds-NP_013061.1_MUCL42920 | 59.2 | 60.9 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:64036-65181:- | gene-YLL039C_NCIM3186 | rna-NM_001181859.1_NCIM3186 | cds-NP_013061.1_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:50992-52137:- | gene-YLL039C_NCYC1407 | rna-NM_001181859.1_NCYC1407 | cds-NP_013061.1_NCYC1407 | 98.4 | 99.8 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:57679-58824:- | gene-YLL039C_PE2H3 | rna-NM_001181859.1_PE2H3 | cds-NP_013061.1_PE2H3 | 98.4 | 99.8 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:57485-58630:- | gene-YLL039C_PE2H4 | rna-NM_001181859.1_PE2H4 | cds-NP_013061.1_PE2H4 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:64062-65207:- | gene-YLL039C_S288C | rna-NM_001181859.1_S288C | cds-NP_013061.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000047.1:57353-58726:- | gene-YLL039C_SA1 | rna-NM_001181859.1_SA1 | cds-NP_013061.1_SA1 | 81.2 | 99.6 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:51661-52746:- | gene-YLL039C_ThermosaccDry | rna-NM_001181859.1_ThermosaccDry | cds-NP_013061.1_ThermosaccDry | 86.0 | 93.5 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:65254-66399:- | gene-YLL039C_VR1 | rna-NM_001181859.1_VR1 | cds-NP_013061.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:50985-52130:- | gene-YLL039C_ZTW1 | rna-NM_001181859.1_ZTW1 | cds-NP_013061.1_ZTW1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:59608-60753:- | gene-YLL039C_Sparadoxus | rna-NM_001181859.1_Sparadoxus | cds-NP_013061.1_Sparadoxus | 87.9 | 99.6 | Verified | 1 | 1 | 1 | True | True | False | False | False |