Gene name: UBC6
Reference locus (S288C): YER100W
Gene biotype: protein_coding
Description: Ubiquitin-conjugating enzyme involved in ERAD; located at the cytosolic side of the ER membrane; tail region contains a transmembrane segment at the C-terminus; substrate of the ubiquitin-proteasome pathway; ER-associated protein degradation is also known as ERAD
Top 10 interactors (score): SSM4 (0.99); UBC7 (0.984); ALG9 (0.92); HRD1 (0.909); UFD4 (0.907); TAF10 (0.899); TFC1 (0.856); SEC61 (0.818); CDC48 (0.81); RSP5 (0.783); ASI3 (0.778); CUE1 (0.778); SBH2 (0.754); HRD3 (0.752); ASI1 (0.726); ASI2 (0.715); UFD1 (0.713); UBC4 (0.703); SEC63 (0.699); MATALPHA2 (0.698)
Homologues (species, bitscore): UBE2J2 (Homo sapiens, 188.3); Ube2j2 (Mus musculus, 198.7); ube2j2 (Danio rerio, 198.0); ube2j2 (Xenopus tropicalis, 199.1); CG5823 (Drosophila melanogaster, 196.1); ubc-26 (Caenorhabditis elegans, 193.0); UBC33 (Arabidopsis thaliana, 193.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:352947-353699:+ | gene-YER100W_AKU4011 | rna-NM_001178991.3_AKU4011 | cds-NP_011026.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:71411-72163:- | gene-YER100W_BG1 | rna-NM_001178991.3_BG1 | cds-NP_011026.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:363421-364173:+ | gene-YER100W_Bruggeman | rna-NM_001178991.3_Bruggeman | cds-NP_011026.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:357709-358461:+ | gene-YER100W_CAT1 | rna-NM_001178991.3_CAT1 | cds-NP_011026.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:352812-353564:+ | gene-YER100W_CBS1585 | rna-NM_001178991.3_CBS1585 | cds-NP_011026.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:355301-356053:+ | gene-YER100W_CBS436 | rna-NM_001178991.3_CBS436 | cds-NP_011026.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:352268-353020:+ | gene-YER100W_CBS6412 | rna-NM_001178991.3_CBS6412 | cds-NP_011026.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:358258-359010:+ | gene-YER100W_CBS6413 | rna-NM_001178991.3_CBS6413 | cds-NP_011026.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:357335-358087:+ | gene-YER100W_CENPK1137D | rna-NM_001178991.3_CENPK1137D | cds-NP_011026.3_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:353289-354041:+ | gene-YER100W_EthanolRed | rna-NM_001178991.3_EthanolRed | cds-NP_011026.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:353734-354486:+ | gene-YER100W_FaliES1 | rna-NM_001178991.3_FaliES1 | cds-NP_011026.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000356.1:2966-3718:- | gene-YER100W_JAY291 | rna-NM_001178991.3_JAY291 | cds-NP_011026.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:359298-360050:+ | gene-YER100W_MUCL30387 | rna-NM_001178991.3_MUCL30387 | cds-NP_011026.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:354846-355598:+ | gene-YER100W_MUCL30388 | rna-NM_001178991.3_MUCL30388 | cds-NP_011026.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:351836-352588:+ | gene-YER100W_MUCL39482 | rna-NM_001178991.3_MUCL39482 | cds-NP_011026.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:360334-361086:+ | gene-YER100W_MUCL42920 | rna-NM_001178991.3_MUCL42920 | cds-NP_011026.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:359561-360313:+ | gene-YER100W_NCIM3186 | rna-NM_001178991.3_NCIM3186 | cds-NP_011026.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:356899-357651:+ | gene-YER100W_NCYC1407 | rna-NM_001178991.3_NCYC1407 | cds-NP_011026.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:367937-368689:+ | gene-YER100W_PE2H3 | rna-NM_001178991.3_PE2H3 | cds-NP_011026.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:357878-358630:+ | gene-YER100W_PE2H4 | rna-NM_001178991.3_PE2H4 | cds-NP_011026.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:359562-360314:+ | gene-YER100W_S288C | rna-NM_001178991.3_S288C | cds-NP_011026.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:69178-69930:+ | gene-YER100W_SA1 | rna-NM_001178991.3_SA1 | cds-NP_011026.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:354531-355283:+ | gene-YER100W_ThermosaccDry | rna-NM_001178991.3_ThermosaccDry | cds-NP_011026.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:355576-356328:+ | gene-YER100W_VR1 | rna-NM_001178991.3_VR1 | cds-NP_011026.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:351696-352448:+ | gene-YER100W_ZTW1 | rna-NM_001178991.3_ZTW1 | cds-NP_011026.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:355605-356357:+ | gene-YER100W_Sparadoxus | rna-NM_001178991.3_Sparadoxus | cds-NP_011026.3_Sparadoxus | 91.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |