Gene name: UBC13
Reference locus (S288C): YDR092W
Gene biotype: protein_coding
Description: E2 ubiquitin-conjugating enzyme; involved in the error-free DNA postreplication repair pathway; interacts with Mms2p to assemble ubiquitin chains at the Ub Lys-63 residue; DNA damage triggers redistribution from the cytoplasm to the nucleus
Top 10 interactors (score): RAD5 (0.999); MMS2 (0.999); UBI4 (0.999); UBA1 (0.998); RPS31 (0.998); RPL40B (0.997); RAD18 (0.994); RPL40A (0.993); REV3 (0.993); RAD6 (0.983); UBC9 (0.968); REV1 (0.963); SIZ1 (0.961); POL30 (0.949); SRS2 (0.943); RAD30 (0.939); SMT3 (0.936); HTA1 (0.921); RAD51 (0.918); DMA1 (0.917)
Homologues (species, bitscore): UBE2N (Homo sapiens, 228.4); Ube2n (Mus musculus, 228.4); ube2nb (Danio rerio, 228.0); ube2n (Xenopus tropicalis, 221.9); ben (Drosophila melanogaster, 225.7); ubc-13 (Caenorhabditis elegans, 218.0); UBC35 (Arabidopsis thaliana, 220.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:607431-608159:+ | gene-YDR092W_AKU4011 | rna-NM_001180400.3_AKU4011 | cds-NP_010377.3_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:517169-517898:- | gene-YDR092W_BG1 | rna-NM_001180400.3_BG1 | cds-NP_010377.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:639519-640248:+ | gene-YDR092W_Bruggeman | rna-NM_001180400.3_Bruggeman | cds-NP_010377.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:624351-625079:+ | gene-YDR092W_CAT1 | rna-NM_001180400.3_CAT1 | cds-NP_010377.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:598452-599180:+ | gene-YDR092W_CBS1585 | rna-NM_001180400.3_CBS1585 | cds-NP_010377.3_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:623324-624053:+ | gene-YDR092W_CBS436 | rna-NM_001180400.3_CBS436 | cds-NP_010377.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:594864-595592:+ | gene-YDR092W_CBS6412 | rna-NM_001180400.3_CBS6412 | cds-NP_010377.3_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:623397-624125:+ | gene-YDR092W_CBS6413 | rna-NM_001180400.3_CBS6413 | cds-NP_010377.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:628813-629542:+ | gene-YDR092W_CENPK1137D | rna-NM_001180400.3_CENPK1137D | cds-NP_010377.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:609221-609949:+ | gene-YDR092W_EthanolRed | rna-NM_001180400.3_EthanolRed | cds-NP_010377.3_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:616014-616742:+ | gene-YDR092W_FaliES1 | rna-NM_001180400.3_FaliES1 | cds-NP_010377.3_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000358.1:14661-15390:- | gene-YDR092W_JAY291 | rna-NM_001180400.3_JAY291 | cds-NP_010377.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:624137-624865:+ | gene-YDR092W_MUCL30387 | rna-NM_001180400.3_MUCL30387 | cds-NP_010377.3_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:614447-615176:+ | gene-YDR092W_MUCL30388 | rna-NM_001180400.3_MUCL30388 | cds-NP_010377.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:599822-600550:+ | gene-YDR092W_MUCL39482 | rna-NM_001180400.3_MUCL39482 | cds-NP_010377.3_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:531138-531867:+ | gene-YDR092W_MUCL42920 | rna-NM_001180400.3_MUCL42920 | cds-NP_010377.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:629799-630528:+ | gene-YDR092W_NCIM3186 | rna-NM_001180400.3_NCIM3186 | cds-NP_010377.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:598729-599457:+ | gene-YDR092W_NCYC1407 | rna-NM_001180400.3_NCYC1407 | cds-NP_010377.3_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:618195-618924:+ | gene-YDR092W_PE2H3 | rna-NM_001180400.3_PE2H3 | cds-NP_010377.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:617500-618229:+ | gene-YDR092W_PE2H4 | rna-NM_001180400.3_PE2H4 | cds-NP_010377.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:629876-630605:+ | gene-YDR092W_S288C | rna-NM_001180400.3_S288C | cds-NP_010377.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:14735-15464:- | gene-YDR092W_SA1 | rna-NM_001180400.3_SA1 | cds-NP_010377.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:615544-616272:+ | gene-YDR092W_ThermosaccDry | rna-NM_001180400.3_ThermosaccDry | cds-NP_010377.3_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:628094-628823:+ | gene-YDR092W_VR1 | rna-NM_001180400.3_VR1 | cds-NP_010377.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:613127-613855:+ | gene-YDR092W_ZTW1 | rna-NM_001180400.3_ZTW1 | cds-NP_010377.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:617721-618451:+ | gene-YDR092W_Sparadoxus | rna-NM_001180400.3_Sparadoxus | cds-NP_010377.3_Sparadoxus | 91.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |