Gene name: UBC12
Reference locus (S288C): YLR306W
Gene biotype: protein_coding
Description: NEDD8-conjugating enzyme UBC12; Enzyme that mediates the conjugation of Rub1p; a ubiquitin-like protein, to other proteins; related to E2 ubiquitin-conjugating enzymes
Top 10 interactors (score): DCN1 (0.999); CDC53 (0.999); ULA1 (0.999); UBA3 (0.999); HRT1 (0.999); CUL3 (0.998); RUB1 (0.993); SKP1 (0.991); MMS2 (0.98); UBA1 (0.977); RTT101 (0.975); CIR1 (0.96); CKS1 (0.953); AOS1 (0.943); UBA2 (0.938); RRI1 (0.901); APC11 (0.846); YLR352W (0.82); RPN11 (0.791); TFB3 (0.787)
Homologues (species, bitscore): UBE2M (Homo sapiens, 153.3); Ube2m (Mus musculus, 153.3); zgc:55512 (Danio rerio, 94.4); ube2m (Xenopus tropicalis, 154.5); UbcE2M (Drosophila melanogaster, 163.3); ubc-1 (Caenorhabditis elegans, 94.7); RCE1 (Arabidopsis thaliana, 153.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:692598-693298:+ | gene-YLR306W_AKU4011 | rna-NM_001182194.1_AKU4011 | cds-NP_013409.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:39325-40025:- | gene-YLR306W_BG1 | rna-NM_001182194.1_BG1 | cds-NP_013409.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:728427-729127:+ | gene-YLR306W_Bruggeman | rna-NM_001182194.1_Bruggeman | cds-NP_013409.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:726601-727301:+ | gene-YLR306W_CAT1 | rna-NM_001182194.1_CAT1 | cds-NP_013409.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:727525-728225:+ | gene-YLR306W_CBS1585 | rna-NM_001182194.1_CBS1585 | cds-NP_013409.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:712142-712842:+ | gene-YLR306W_CBS436 | rna-NM_001182194.1_CBS436 | cds-NP_013409.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:690165-690865:+ | gene-YLR306W_CBS6412 | rna-NM_001182194.1_CBS6412 | cds-NP_013409.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:728190-728890:+ | gene-YLR306W_CBS6413 | rna-NM_001182194.1_CBS6413 | cds-NP_013409.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:728764-729464:+ | gene-YLR306W_CENPK1137D | rna-NM_001182194.1_CENPK1137D | cds-NP_013409.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:685877-686577:+ | gene-YLR306W_EthanolRed | rna-NM_001182194.1_EthanolRed | cds-NP_013409.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:715077-715777:+ | gene-YLR306W_FaliES1 | rna-NM_001182194.1_FaliES1 | cds-NP_013409.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000296.1:52043-52743:- | gene-YLR306W_JAY291 | rna-NM_001182194.1_JAY291 | cds-NP_013409.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:727661-728361:+ | gene-YLR306W_MUCL30387 | rna-NM_001182194.1_MUCL30387 | cds-NP_013409.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:733244-733944:+ | gene-YLR306W_MUCL30388 | rna-NM_001182194.1_MUCL30388 | cds-NP_013409.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:728755-729455:+ | gene-YLR306W_MUCL39482 | rna-NM_001182194.1_MUCL39482 | cds-NP_013409.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:723910-724610:+ | gene-YLR306W_MUCL42920 | rna-NM_001182194.1_MUCL42920 | cds-NP_013409.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:744125-744825:+ | gene-YLR306W_NCIM3186 | rna-NM_001182194.1_NCIM3186 | cds-NP_013409.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:738097-738797:+ | gene-YLR306W_NCYC1407 | rna-NM_001182194.1_NCYC1407 | cds-NP_013409.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:725910-726610:+ | gene-YLR306W_PE2H3 | rna-NM_001182194.1_PE2H3 | cds-NP_013409.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:725654-726354:+ | gene-YLR306W_PE2H4 | rna-NM_001182194.1_PE2H4 | cds-NP_013409.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:744151-744851:+ | gene-YLR306W_S288C | rna-NM_001182194.1_S288C | cds-NP_013409.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000039.1:39451-40151:- | gene-YLR306W_SA1 | rna-NM_001182194.1_SA1 | cds-NP_013409.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:716971-717671:+ | gene-YLR306W_ThermosaccDry | rna-NM_001182194.1_ThermosaccDry | cds-NP_013409.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:729119-729819:+ | gene-YLR306W_VR1 | rna-NM_001182194.1_VR1 | cds-NP_013409.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:55397-56097:+ | gene-YLR306W_ZTW1 | rna-NM_001182194.1_ZTW1 | cds-NP_013409.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:703079-703780:+ | gene-YLR306W_Sparadoxus | rna-NM_001182194.1_Sparadoxus | cds-NP_013409.1_Sparadoxus | 90.8 | 99.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |