Gene name: UBC11
Reference locus (S288C): YOR339C
Gene biotype: protein_coding
Description: Putative e2 ubiquitin-protein ligase ubc11; Ubiquitin-conjugating enzyme; most similar in sequence to Xenopus ubiquitin-conjugating enzyme E2-C, but not a true functional homolog of this E2; unlike E2-C, not required for the degradation of mitotic cyclin Clb2
Top 10 interactors (score): APC11 (0.999); UBA1 (0.998); CDC16 (0.993); APC2 (0.986); CDC20 (0.974); CDH1 (0.967); IPL1 (0.964); CDC27 (0.96); AMA1 (0.944); DOC1 (0.941); CDC23 (0.937); KIP2 (0.937); TOP2 (0.935); MAD2 (0.934); ESP1 (0.931); CKS1 (0.931); RFC5 (0.92); NUF2 (0.917); MPS1 (0.914); YCG1 (0.912)
Homologues (species, bitscore): UBE2C (Homo sapiens, 164.1); Ube2c (Mus musculus, 162.5); ube2c (Danio rerio, 171.8); ube2c (Xenopus tropicalis, 164.5); vih (Drosophila melanogaster, 172.2); ubc-1 (Caenorhabditis elegans, 132.5); UBC20 (Arabidopsis thaliana, 157.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:948844-949314:- | gene-YOR339C_AKU4011 | rna-NM_001183759.3_AKU4011 | cds-NP_014984.3_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000087.1:11573-12043:+ | gene-YOR339C_BG1 | rna-NM_001183759.3_BG1 | cds-NP_014984.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:934238-934708:- | gene-YOR339C_Bruggeman | rna-NM_001183759.3_Bruggeman | cds-NP_014984.3_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:934979-935449:- | gene-YOR339C_CAT1 | rna-NM_001183759.3_CAT1 | cds-NP_014984.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:932672-933142:- | gene-YOR339C_CBS1585 | rna-NM_001183759.3_CBS1585 | cds-NP_014984.3_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:930477-930947:- | gene-YOR339C_CBS436 | rna-NM_001183759.3_CBS436 | cds-NP_014984.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:163071-163541:- | gene-YOR339C_CBS6412 | rna-NM_001183759.3_CBS6412 | cds-NP_014984.3_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:937525-937995:- | gene-YOR339C_CBS6413 | rna-NM_001183759.3_CBS6413 | cds-NP_014984.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:958147-958617:- | gene-YOR339C_CENPK1137D | rna-NM_001183759.3_CENPK1137D | cds-NP_014984.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:177705-178175:- | gene-YOR339C_EthanolRed | rna-NM_001183759.3_EthanolRed | cds-NP_014984.3_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:930377-930847:- | gene-YOR339C_FaliES1 | rna-NM_001183759.3_FaliES1 | cds-NP_014984.3_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:72409-72879:+ | gene-YOR339C_JAY291 | rna-NM_001183759.3_JAY291 | cds-NP_014984.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:938732-939202:- | gene-YOR339C_MUCL30387 | rna-NM_001183759.3_MUCL30387 | cds-NP_014984.3_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:946481-946951:- | gene-YOR339C_MUCL30388 | rna-NM_001183759.3_MUCL30388 | cds-NP_014984.3_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:939211-939681:- | gene-YOR339C_MUCL39482 | rna-NM_001183759.3_MUCL39482 | cds-NP_014984.3_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:948671-949141:- | gene-YOR339C_MUCL42920 | rna-NM_001183759.3_MUCL42920 | cds-NP_014984.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:958251-958721:- | gene-YOR339C_NCIM3186 | rna-NM_001183759.3_NCIM3186 | cds-NP_014984.3_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:940220-940690:- | gene-YOR339C_NCYC1407 | rna-NM_001183759.3_NCYC1407 | cds-NP_014984.3_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:938462-938932:- | gene-YOR339C_PE2H3 | rna-NM_001183759.3_PE2H3 | cds-NP_014984.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:954814-955284:- | gene-YOR339C_PE2H4 | rna-NM_001183759.3_PE2H4 | cds-NP_014984.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:958362-958832:- | gene-YOR339C_S288C | rna-NM_001183759.3_S288C | cds-NP_014984.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:68780-69250:- | gene-YOR339C_SA1 | rna-NM_001183759.3_SA1 | cds-NP_014984.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:929546-930016:- | gene-YOR339C_ThermosaccDry | rna-NM_001183759.3_ThermosaccDry | cds-NP_014984.3_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:992856-993326:- | gene-YOR339C_VR1 | rna-NM_001183759.3_VR1 | cds-NP_014984.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:662447-662917:- | gene-YOR339C_ZTW1 | rna-NM_001183759.3_ZTW1 | cds-NP_014984.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:936797-937267:- | gene-YOR339C_Sparadoxus | rna-NM_001183759.3_Sparadoxus | cds-NP_014984.3_Sparadoxus | 89.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |