Gene name: UAF30
Reference locus (S288C): YOR295W
Gene biotype: protein_coding
Description: Subunit of UAF (upstream activation factor) complex; UAF is an RNA polymerase I specific transcription stimulatory factor composed of Uaf30p, Rrn5p, Rrn9p, Rrn10p, histones H3 and H4; targeting factor for the UAF that facilitates activation of many rDNA genes; deletion decreases cellular growth rate; UAF30 has a paralog, TRI1, that arose from the whole genome duplication
Top 10 interactors (score): RRN5 (0.999); RRN10 (0.998); RRN9 (0.996); RRN7 (0.984); RRN6 (0.98); RRN11 (0.976); HMO1 (0.791); RPA190 (0.754); RRN3 (0.751); YGR160W (0.745); YKL118W (0.712); YBL094C (0.705); RSC8 (0.705); FOB1 (0.695); SPT15 (0.692); YDR157W (0.675); SFH1 (0.661); SNF5 (0.661); SWI3 (0.66); RPA49 (0.653)
Homologues (species, bitscore): SMARCD1 (Homo sapiens, 53.9); Smarcd1 (Mus musculus, 55.1); smarcd1 (Danio rerio, 52.0); smarcd1 (Xenopus tropicalis, 54.7); Non2 (Drosophila melanogaster, 59.7); T24G10.2 (Caenorhabditis elegans, 53.9); AT1G49520 (Arabidopsis thaliana, 87.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:859669-860355:+ | gene-YOR295W_AKU4011 | rna-NM_001183714.3_AKU4011 | cds-NP_014938.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:261712-262398:+ | gene-YOR295W_BG1 | rna-NM_001183714.3_BG1 | cds-NP_014938.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:845114-845800:+ | gene-YOR295W_Bruggeman | rna-NM_001183714.3_Bruggeman | cds-NP_014938.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:845840-846526:+ | gene-YOR295W_CAT1 | rna-NM_001183714.3_CAT1 | cds-NP_014938.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:843503-844189:+ | gene-YOR295W_CBS1585 | rna-NM_001183714.3_CBS1585 | cds-NP_014938.3_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:841343-842029:+ | gene-YOR295W_CBS436 | rna-NM_001183714.3_CBS436 | cds-NP_014938.3_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:839201-839887:+ | gene-YOR295W_CBS6412 | rna-NM_001183714.3_CBS6412 | cds-NP_014938.3_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:848396-849082:+ | gene-YOR295W_CBS6413 | rna-NM_001183714.3_CBS6413 | cds-NP_014938.3_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:868997-869683:+ | gene-YOR295W_CENPK1137D | rna-NM_001183714.3_CENPK1137D | cds-NP_014938.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:835583-836269:+ | gene-YOR295W_EthanolRed | rna-NM_001183714.3_EthanolRed | cds-NP_014938.3_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:841201-841887:+ | gene-YOR295W_FaliES1 | rna-NM_001183714.3_FaliES1 | cds-NP_014938.3_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:161356-162042:- | gene-YOR295W_JAY291 | rna-NM_001183714.3_JAY291 | cds-NP_014938.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:849365-850051:+ | gene-YOR295W_MUCL30387 | rna-NM_001183714.3_MUCL30387 | cds-NP_014938.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:857341-858027:+ | gene-YOR295W_MUCL30388 | rna-NM_001183714.3_MUCL30388 | cds-NP_014938.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:850031-850717:+ | gene-YOR295W_MUCL39482 | rna-NM_001183714.3_MUCL39482 | cds-NP_014938.3_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:859531-860217:+ | gene-YOR295W_MUCL42920 | rna-NM_001183714.3_MUCL42920 | cds-NP_014938.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:869097-869783:+ | gene-YOR295W_NCIM3186 | rna-NM_001183714.3_NCIM3186 | cds-NP_014938.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:851044-851730:+ | gene-YOR295W_NCYC1407 | rna-NM_001183714.3_NCYC1407 | cds-NP_014938.3_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:849275-849961:+ | gene-YOR295W_PE2H3 | rna-NM_001183714.3_PE2H3 | cds-NP_014938.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:865625-866311:+ | gene-YOR295W_PE2H4 | rna-NM_001183714.3_PE2H4 | cds-NP_014938.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:869208-869894:+ | gene-YOR295W_S288C | rna-NM_001183714.3_S288C | cds-NP_014938.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:278906-279592:+ | gene-YOR295W_SA1 | rna-NM_001183714.3_SA1 | cds-NP_014938.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:840384-841070:+ | gene-YOR295W_ThermosaccDry | rna-NM_001183714.3_ThermosaccDry | cds-NP_014938.3_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:903719-904405:+ | gene-YOR295W_VR1 | rna-NM_001183714.3_VR1 | cds-NP_014938.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:573271-573957:+ | gene-YOR295W_ZTW1 | rna-NM_001183714.3_ZTW1 | cds-NP_014938.3_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:847194-847883:+ | gene-YOR295W_Sparadoxus | rna-NM_001183714.3_Sparadoxus | cds-NP_014938.3_Sparadoxus | 86.4 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |