TYC1 (YBR296C-A)

Gene profile

Gene name: TYC1
Reference locus (S288C): YBR296C-A
Gene biotype: protein_coding

Description: Uncharacterized protein YBR296C-A; Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching

Top 10 interactors (score): PDS1 (0.574); CDC16 (0.49); MAD2 (0.457)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005296.1:784449-784568:- gene-YBR296C-A_AKU4011 rna-NM_001184587.3_AKU4011 cds-NP_878055.3_AKU4011 99.1 100.0 Mismatch 1 1 1 True True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000001.1:3523-3642:- gene-YBR296C-A_BG1 rna-NM_001184587.3_BG1 cds-NP_878055.3_BG1 100.0 100.0 Mismatch 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005504.1:785528-785647:- gene-YBR296C-A_Bruggeman rna-NM_001184587.3_Bruggeman cds-NP_878055.3_Bruggeman 100.0 100.0 Mismatch 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005520.1:789280-789399:- gene-YBR296C-A_CAT1 rna-NM_001184587.3_CAT1 cds-NP_878055.3_CAT1 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005360.1:776016-776135:- gene-YBR296C-A_CBS1585 rna-NM_001184587.3_CBS1585 cds-NP_878055.3_CBS1585 99.1 100.0 Mismatch 1 1 1 True True False False False
CBS436 GCA_001738355.1 Sake Asia CM005344.1:782409-782528:- gene-YBR296C-A_CBS436 rna-NM_001184587.3_CBS436 cds-NP_878055.3_CBS436 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005328.1:870565-870684:- gene-YBR296C-A_CBS6412 rna-NM_001184587.3_CBS6412 cds-NP_878055.3_CBS6412 99.1 100.0 Mismatch 1 1 1 True True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005312.1:782044-782163:- gene-YBR296C-A_CBS6413 rna-NM_001184587.3_CBS6413 cds-NP_878055.3_CBS6413 99.1 100.0 Mismatch 1 1 1 True True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001523.1:794022-794141:- gene-YBR296C-A_CENPK1137D rna-NM_001184587.3_CENPK1137D cds-NP_878055.3_CENPK1137D 100.0 100.0 Mismatch 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005472.1:907606-907725:- gene-YBR296C-A_EthanolRed rna-NM_001184587.3_EthanolRed cds-NP_878055.3_EthanolRed 99.1 100.0 Mismatch 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005536.1:800939-801058:- gene-YBR296C-A_FaliES1 rna-NM_001184587.3_FaliES1 cds-NP_878055.3_FaliES1 99.1 100.0 Mismatch 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000067.1:3227-3346:+ gene-YBR296C-A_JAY291 rna-NM_001184587.3_JAY291 cds-NP_878055.3_JAY291 100.0 100.0 Mismatch 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005408.1:787597-787716:- gene-YBR296C-A_MUCL30387 rna-NM_001184587.3_MUCL30387 cds-NP_878055.3_MUCL30387 100.0 100.0 Mismatch 1 1 1 True True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005440.1:804929-805048:- gene-YBR296C-A_MUCL30388 rna-NM_001184587.3_MUCL30388 cds-NP_878055.3_MUCL30388 100.0 100.0 Mismatch 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005280.1:774323-774442:- gene-YBR296C-A_MUCL39482 rna-NM_001184587.3_MUCL39482 cds-NP_878055.3_MUCL39482 99.1 100.0 Mismatch 1 1 1 True True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005424.1:784139-784258:- gene-YBR296C-A_MUCL42920 rna-NM_001184587.3_MUCL42920 cds-NP_878055.3_MUCL42920 100.0 100.0 Mismatch 1 1 1 True True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011811.1:799920-800039:- gene-YBR296C-A_NCIM3186 rna-NM_001184587.3_NCIM3186 cds-NP_878055.3_NCIM3186 99.1 100.0 Mismatch 1 1 1 True True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005264.1:776210-776329:- gene-YBR296C-A_NCYC1407 rna-NM_001184587.3_NCYC1407 cds-NP_878055.3_NCYC1407 99.1 100.0 Mismatch 1 1 1 True True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994141.1:799308-799427:- gene-YBR296C-A_PE2H3 rna-NM_001184587.3_PE2H3 cds-NP_878055.3_PE2H3 100.0 100.0 Mismatch 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999873.1:796984-797103:- gene-YBR296C-A_PE2H4 rna-NM_001184587.3_PE2H4 cds-NP_878055.3_PE2H4 100.0 100.0 Mismatch 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001134.8:800123-800242:- gene-YBR296C-A_S288C rna-NM_001184587.3_S288C cds-NP_878055.3_S288C 100.0 100.0 Mismatch 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000019.1:155264-155383:- gene-YBR296C-A_SA1 rna-NM_001184587.3_SA1 cds-NP_878055.3_SA1 100.0 100.0 Mismatch 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005488.1:799931-800050:- gene-YBR296C-A_ThermosaccDry rna-NM_001184587.3_ThermosaccDry cds-NP_878055.3_ThermosaccDry 99.1 100.0 Mismatch 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005456.1:780006-780125:- gene-YBR296C-A_VR1 rna-NM_001184587.3_VR1 cds-NP_878055.3_VR1 100.0 100.0 Mismatch 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000003.1:772634-772753:- gene-YBR296C-A_ZTW1 rna-NM_001184587.3_ZTW1 cds-NP_878055.3_ZTW1 99.1 100.0 Mismatch 1 1 1 True True False False False

Additional files