Gene name: TVP38
Reference locus (S288C): YKR088C
Gene biotype: protein_coding
Description: Integral membrane protein; localized to late Golgi vesicles along with the v-SNARE Tlg2p; required for asymmetric localization of Kar9p during mitosis; GFP-fusion protein localizes to the cytoplasm in a punctate pattern; Belongs to the TVP38/TMEM64 family
Top 10 interactors (score): TVP15 (0.923); TVP18 (0.909); TVP23 (0.895); RRD2 (0.846); CSM3 (0.802); SLD2 (0.781); SHE1 (0.765); GVP36 (0.745); TLG2 (0.72); TMS1 (0.717); YMR262W (0.716); YIP4 (0.715); YHR127W (0.713); MSC7 (0.712); YHR131C (0.711); SNA2 (0.697); KXD1 (0.69); CNL1 (0.671); SET5 (0.576); LDB18 (0.574)
Homologues (species, bitscore): CG11367 (Drosophila melanogaster, 62.0); AT2G02370 (Arabidopsis thaliana, 51.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:590436-591449:- | gene-YKR088C_AKU4011 | rna-NM_001179878.3_AKU4011 | cds-NP_013014.3_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:52776-53789:+ | gene-YKR088C_BG1 | rna-NM_001179878.3_BG1 | cds-NP_013014.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:613014-614027:- | gene-YKR088C_Bruggeman | rna-NM_001179878.3_Bruggeman | cds-NP_013014.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:608935-609948:- | gene-YKR088C_CAT1 | rna-NM_001179878.3_CAT1 | cds-NP_013014.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:602923-603936:- | gene-YKR088C_CBS1585 | rna-NM_001179878.3_CBS1585 | cds-NP_013014.3_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:601308-602321:- | gene-YKR088C_CBS436 | rna-NM_001179878.3_CBS436 | cds-NP_013014.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:586211-587224:- | gene-YKR088C_CBS6412 | rna-NM_001179878.3_CBS6412 | cds-NP_013014.3_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:602741-603754:- | gene-YKR088C_CBS6413 | rna-NM_001179878.3_CBS6413 | cds-NP_013014.3_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:604060-605073:- | gene-YKR088C_CENPK1137D | rna-NM_001179878.3_CENPK1137D | cds-NP_013014.3_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:600247-601260:- | gene-YKR088C_EthanolRed | rna-NM_001179878.3_EthanolRed | cds-NP_013014.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:604142-605155:- | gene-YKR088C_FaliES1 | rna-NM_001179878.3_FaliES1 | cds-NP_013014.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000426.1:39778-40791:+ | gene-YKR088C_JAY291 | rna-NM_001179878.3_JAY291 | cds-NP_013014.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:612509-613522:- | gene-YKR088C_MUCL30387 | rna-NM_001179878.3_MUCL30387 | cds-NP_013014.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:606853-607866:- | gene-YKR088C_MUCL30388 | rna-NM_001179878.3_MUCL30388 | cds-NP_013014.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:601764-602777:- | gene-YKR088C_MUCL39482 | rna-NM_001179878.3_MUCL39482 | cds-NP_013014.3_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:607787-608800:- | gene-YKR088C_MUCL42920 | rna-NM_001179878.3_MUCL42920 | cds-NP_013014.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:604394-605407:- | gene-YKR088C_NCIM3186 | rna-NM_001179878.3_NCIM3186 | cds-NP_013014.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:602176-603189:- | gene-YKR088C_NCYC1407 | rna-NM_001179878.3_NCYC1407 | cds-NP_013014.3_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:627381-628394:- | gene-YKR088C_PE2H3 | rna-NM_001179878.3_PE2H3 | cds-NP_013014.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:611785-612798:- | gene-YKR088C_PE2H4 | rna-NM_001179878.3_PE2H4 | cds-NP_013014.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:604405-605418:- | gene-YKR088C_S288C | rna-NM_001179878.3_S288C | cds-NP_013014.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000029.1:76431-77444:+ | gene-YKR088C_SA1 | rna-NM_001179878.3_SA1 | cds-NP_013014.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:603389-604402:- | gene-YKR088C_ThermosaccDry | rna-NM_001179878.3_ThermosaccDry | cds-NP_013014.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:602652-603665:- | gene-YKR088C_VR1 | rna-NM_001179878.3_VR1 | cds-NP_013014.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:600370-601383:- | gene-YKR088C_ZTW1 | rna-NM_001179878.3_ZTW1 | cds-NP_013014.3_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:625632-626645:- | gene-YKR088C_Sparadoxus | rna-NM_001179878.3_Sparadoxus | cds-NP_013014.3_Sparadoxus | 90.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |