Gene name: TVP23
Reference locus (S288C): YDR084C
Gene biotype: protein_coding
Description: Integral membrane protein; localized to late Golgi vesicles along with the v-SNARE Tlg2p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; Belongs to the TVP23 family
Top 10 interactors (score): YIP4 (0.98); TVP15 (0.948); TVP18 (0.944); YIP5 (0.902); TVP38 (0.895); EMC10 (0.872); SVP26 (0.813); RTR2 (0.802); HEM12 (0.787); YDR090C (0.785); AIM7 (0.766); APS2 (0.765); TLG2 (0.761); INH1 (0.746); YIP1 (0.734); UBC13 (0.732); YDR061W (0.716); GVP36 (0.712); ATP17 (0.697); PHS1 (0.697)
Homologues (species, bitscore): TVP23B (Homo sapiens, 93.6); Tvp23a (Mus musculus, 99.8); tvp23b (Danio rerio, 92.4); tvp23b (Xenopus tropicalis, 94.7); CG5021 (Drosophila melanogaster, 98.6); C34D4.4 (Caenorhabditis elegans, 87.0); AT1G09330 (Arabidopsis thaliana, 97.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:590964-591563:- | gene-YDR084C_AKU4011 | rna-NM_001180392.3_AKU4011 | cds-NP_010369.3_AKU4011 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:533755-534354:+ | gene-YDR084C_BG1 | rna-NM_001180392.3_BG1 | cds-NP_010369.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:623192-623791:- | gene-YDR084C_Bruggeman | rna-NM_001180392.3_Bruggeman | cds-NP_010369.3_Bruggeman | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:606833-607432:- | gene-YDR084C_CAT1 | rna-NM_001180392.3_CAT1 | cds-NP_010369.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:581983-582582:- | gene-YDR084C_CBS1585 | rna-NM_001180392.3_CBS1585 | cds-NP_010369.3_CBS1585 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:607000-607599:- | gene-YDR084C_CBS436 | rna-NM_001180392.3_CBS436 | cds-NP_010369.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:578398-578997:- | gene-YDR084C_CBS6412 | rna-NM_001180392.3_CBS6412 | cds-NP_010369.3_CBS6412 | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:606928-607527:- | gene-YDR084C_CBS6413 | rna-NM_001180392.3_CBS6413 | cds-NP_010369.3_CBS6413 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:612450-613049:- | gene-YDR084C_CENPK1137D | rna-NM_001180392.3_CENPK1137D | cds-NP_010369.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:592755-593354:- | gene-YDR084C_EthanolRed | rna-NM_001180392.3_EthanolRed | cds-NP_010369.3_EthanolRed | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:599549-600148:- | gene-YDR084C_FaliES1 | rna-NM_001180392.3_FaliES1 | cds-NP_010369.3_FaliES1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000358.1:31120-31719:+ | gene-YDR084C_JAY291 | rna-NM_001180392.3_JAY291 | cds-NP_010369.3_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:607809-608408:- | gene-YDR084C_MUCL30387 | rna-NM_001180392.3_MUCL30387 | cds-NP_010369.3_MUCL30387 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:598121-598720:- | gene-YDR084C_MUCL30388 | rna-NM_001180392.3_MUCL30388 | cds-NP_010369.3_MUCL30388 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:583353-583952:- | gene-YDR084C_MUCL39482 | rna-NM_001180392.3_MUCL39482 | cds-NP_010369.3_MUCL39482 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:513932-514531:- | gene-YDR084C_MUCL42920 | rna-NM_001180392.3_MUCL42920 | cds-NP_010369.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:613328-613927:- | gene-YDR084C_NCIM3186 | rna-NM_001180392.3_NCIM3186 | cds-NP_010369.3_NCIM3186 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:582260-582859:- | gene-YDR084C_NCYC1407 | rna-NM_001180392.3_NCYC1407 | cds-NP_010369.3_NCYC1407 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:601730-602329:- | gene-YDR084C_PE2H3 | rna-NM_001180392.3_PE2H3 | cds-NP_010369.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:601035-601634:- | gene-YDR084C_PE2H4 | rna-NM_001180392.3_PE2H4 | cds-NP_010369.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:613405-614004:- | gene-YDR084C_S288C | rna-NM_001180392.3_S288C | cds-NP_010369.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:31330-31929:+ | gene-YDR084C_SA1 | rna-NM_001180392.3_SA1 | cds-NP_010369.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:599079-599678:- | gene-YDR084C_ThermosaccDry | rna-NM_001180392.3_ThermosaccDry | cds-NP_010369.3_ThermosaccDry | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:611630-612229:- | gene-YDR084C_VR1 | rna-NM_001180392.3_VR1 | cds-NP_010369.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:596662-597261:- | gene-YDR084C_ZTW1 | rna-NM_001180392.3_ZTW1 | cds-NP_010369.3_ZTW1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:601360-601959:- | gene-YDR084C_Sparadoxus | rna-NM_001180392.3_Sparadoxus | cds-NP_010369.3_Sparadoxus | 89.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |