Gene name: TUB4
Reference locus (S288C): YLR212C
Gene biotype: protein_coding
Description: Gamma-tubulin; involved in nucleating microtubules from both the cytoplasmic and nuclear faces of the spindle pole body; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): SPC98 (0.999); SPC97 (0.999); SPC110 (0.995); SPC72 (0.995); KAR3 (0.973); CDC31 (0.963); STU2 (0.92); BIM1 (0.914); MAD2 (0.905); VMA6 (0.896); DYN1 (0.877); KAR1 (0.863); SRM1 (0.844); CDC5 (0.834); MPS1 (0.817); MRM2 (0.812); KIP3 (0.795); SPC42 (0.794); CMD1 (0.766); SCS2 (0.759)
Homologues (species, bitscore): TUBG2 (Homo sapiens, 357.1); Tubg2 (Mus musculus, 355.1); tubg1 (Danio rerio, 354.0); tubg1 (Xenopus tropicalis, 322.8); TubG (Drosophila melanogaster, 340.1); tbg-1 (Caenorhabditis elegans, 235.3); TUBG1 (Arabidopsis thaliana, 337.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:519005-520426:- | gene-YLR212C_AKU4011 | rna-NM_001182099.1_AKU4011 | cds-NP_013313.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:76262-77683:- | gene-YLR212C_BG1 | rna-NM_001182099.1_BG1 | cds-NP_013313.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:559235-560656:- | gene-YLR212C_Bruggeman | rna-NM_001182099.1_Bruggeman | cds-NP_013313.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:558880-560301:- | gene-YLR212C_CAT1 | rna-NM_001182099.1_CAT1 | cds-NP_013313.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:554497-555918:- | gene-YLR212C_CBS1585 | rna-NM_001182099.1_CBS1585 | cds-NP_013313.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:544698-546119:- | gene-YLR212C_CBS436 | rna-NM_001182099.1_CBS436 | cds-NP_013313.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:523059-524480:- | gene-YLR212C_CBS6412 | rna-NM_001182099.1_CBS6412 | cds-NP_013313.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:554794-556215:- | gene-YLR212C_CBS6413 | rna-NM_001182099.1_CBS6413 | cds-NP_013313.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:549505-550926:- | gene-YLR212C_CENPK1137D | rna-NM_001182099.1_CENPK1137D | cds-NP_013313.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:518517-519938:- | gene-YLR212C_EthanolRed | rna-NM_001182099.1_EthanolRed | cds-NP_013313.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:547444-548865:- | gene-YLR212C_FaliES1 | rna-NM_001182099.1_FaliES1 | cds-NP_013313.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:74348-75769:- | gene-YLR212C_JAY291 | rna-NM_001182099.1_JAY291 | cds-NP_013313.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:559286-560707:- | gene-YLR212C_MUCL30387 | rna-NM_001182099.1_MUCL30387 | cds-NP_013313.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:564224-565645:- | gene-YLR212C_MUCL30388 | rna-NM_001182099.1_MUCL30388 | cds-NP_013313.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:555480-556901:- | gene-YLR212C_MUCL39482 | rna-NM_001182099.1_MUCL39482 | cds-NP_013313.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:555990-557411:- | gene-YLR212C_MUCL42920 | rna-NM_001182099.1_MUCL42920 | cds-NP_013313.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:564834-566255:- | gene-YLR212C_NCIM3186 | rna-NM_001182099.1_NCIM3186 | cds-NP_013313.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:547899-549320:- | gene-YLR212C_NCYC1407 | rna-NM_001182099.1_NCYC1407 | cds-NP_013313.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:552150-553571:- | gene-YLR212C_PE2H3 | rna-NM_001182099.1_PE2H3 | cds-NP_013313.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:551894-553315:- | gene-YLR212C_PE2H4 | rna-NM_001182099.1_PE2H4 | cds-NP_013313.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:564860-566281:- | gene-YLR212C_S288C | rna-NM_001182099.1_S288C | cds-NP_013313.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:74398-75819:- | gene-YLR212C_SA1 | rna-NM_001182099.1_SA1 | cds-NP_013313.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:549937-551358:- | gene-YLR212C_ThermosaccDry | rna-NM_001182099.1_ThermosaccDry | cds-NP_013313.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:561285-562706:- | gene-YLR212C_VR1 | rna-NM_001182099.1_VR1 | cds-NP_013313.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:74225-75646:- | gene-YLR212C_ZTW1 | rna-NM_001182099.1_ZTW1 | cds-NP_013313.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:536066-537487:- | gene-YLR212C_Sparadoxus | rna-NM_001182099.1_Sparadoxus | cds-NP_013313.1_Sparadoxus | 92.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |