Gene name: TUB3
Reference locus (S288C): YML124C
Gene biotype: protein_coding
Description: Tubulin alpha-3 chain; Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; expressed at lower level than Tub1p; TUB3 has a paralog, TUB1, that arose from the whole genome duplication
Top 10 interactors (score): TUB2 (0.999); PAC2 (0.999); BIM1 (0.998); DYN1 (0.997); STU2 (0.986); ALF1 (0.986); CIN1 (0.985); CIN8 (0.982); RBL2 (0.981); HHT2 (0.971); ACT1 (0.97); BIK1 (0.965); KAR3 (0.961); HHT1 (0.96); TUB1 (0.96); CDC31 (0.952); MAD2 (0.949); TDH2 (0.939); TDH1 (0.938); TDH3 (0.927)
Homologues (species, bitscore): TUBA1C (Homo sapiens, 713.4); Tuba1c (Mus musculus, 713.8); tuba8l2 (Danio rerio, 715.7); tuba1c (Xenopus tropicalis, 715.7); tubA84B (Drosophila melanogaster, 716.1); tba-1 (Caenorhabditis elegans, 708.4); TUA6 (Arabidopsis thaliana, 667.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:15746-17381:- | gene-YML124C_AKU4011 | rna-NM_001182487.1_AKU4011 | cds-NP_013582.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:458876-460511:+ | gene-YML124C_BG1 | rna-NM_001182487.1_BG1 | cds-NP_013582.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:22001-23636:- | gene-YML124C_Bruggeman | rna-NM_001182487.1_Bruggeman | cds-NP_013582.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:23567-25202:- | gene-YML124C_CAT1 | rna-NM_001182487.1_CAT1 | cds-NP_013582.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:15746-17381:- | gene-YML124C_CBS1585 | rna-NM_001182487.1_CBS1585 | cds-NP_013582.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:21761-23396:- | gene-YML124C_CBS436 | rna-NM_001182487.1_CBS436 | cds-NP_013582.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:16508-18143:- | gene-YML124C_CBS6412 | rna-NM_001182487.1_CBS6412 | cds-NP_013582.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:14972-16607:- | gene-YML124C_CBS6413 | rna-NM_001182487.1_CBS6413 | cds-NP_013582.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:16565-18200:- | gene-YML124C_CENPK1137D | rna-NM_001182487.1_CENPK1137D | cds-NP_013582.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:16259-17894:- | gene-YML124C_EthanolRed | rna-NM_001182487.1_EthanolRed | cds-NP_013582.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:16536-18171:- | gene-YML124C_FaliES1 | rna-NM_001182487.1_FaliES1 | cds-NP_013582.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000345.1:72056-73691:+ | gene-YML124C_JAY291 | rna-NM_001182487.1_JAY291 | cds-NP_013582.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:20024-21659:- | gene-YML124C_MUCL30387 | rna-NM_001182487.1_MUCL30387 | cds-NP_013582.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:23442-25077:- | gene-YML124C_MUCL30388 | rna-NM_001182487.1_MUCL30388 | cds-NP_013582.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:15800-17435:- | gene-YML124C_MUCL39482 | rna-NM_001182487.1_MUCL39482 | cds-NP_013582.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:19469-21104:- | gene-YML124C_MUCL42920 | rna-NM_001182487.1_MUCL42920 | cds-NP_013582.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:22002-23637:- | gene-YML124C_NCIM3186 | rna-NM_001182487.1_NCIM3186 | cds-NP_013582.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:16555-18190:- | gene-YML124C_NCYC1407 | rna-NM_001182487.1_NCYC1407 | cds-NP_013582.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:21949-23584:- | gene-YML124C_PE2H3 | rna-NM_001182487.1_PE2H3 | cds-NP_013582.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:21887-23522:- | gene-YML124C_PE2H4 | rna-NM_001182487.1_PE2H4 | cds-NP_013582.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:22048-23683:- | gene-YML124C_S288C | rna-NM_001182487.1_S288C | cds-NP_013582.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000054.1:13862-15497:- | gene-YML124C_SA1 | rna-NM_001182487.1_SA1 | cds-NP_013582.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:15834-17469:- | gene-YML124C_ThermosaccDry | rna-NM_001182487.1_ThermosaccDry | cds-NP_013582.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:20238-21873:- | gene-YML124C_VR1 | rna-NM_001182487.1_VR1 | cds-NP_013582.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000026.1:15024-16659:- | gene-YML124C_ZTW1 | rna-NM_001182487.1_ZTW1 | cds-NP_013582.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:26921-28553:- | gene-YML124C_Sparadoxus | rna-NM_001182487.1_Sparadoxus | cds-NP_013582.1_Sparadoxus | 91.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |