Gene name: TUB2
Reference locus (S288C): YFL037W
Gene biotype: protein_coding
Description: Beta-tubulin; associates with alpha-tubulin (Tub1p and Tub3p) to form tubulin dimer, which polymerizes to form microtubules; mutation in human ortholog is associated with congenital fibrosis of the extraocular muscles (CFEOM) with polymicrogyria
Top 10 interactors (score): BIM1 (0.999); TUB1 (0.999); STU2 (0.999); DYN1 (0.999); TUB3 (0.999); CIN8 (0.997); RBL2 (0.997); KIP1 (0.995); ACT1 (0.994); KAR3 (0.991); CIN1 (0.991); MAD2 (0.988); STU1 (0.987); SMY1 (0.985); CMD1 (0.985); RHO1 (0.975); PAC2 (0.972); SEC4 (0.966); KIP3 (0.966); SPC98 (0.952)
Homologues (species, bitscore): TUBB4B (Homo sapiens, 737.6); Tubb4b (Mus musculus, 737.6); zgc:123194 (Danio rerio, 743.4); tubb3 (Xenopus tropicalis, 738.4); betaTub85D (Drosophila melanogaster, 734.6); ben-1 (Caenorhabditis elegans, 737.3); TUB6 (Arabidopsis thaliana, 719.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:52671-54044:+ | gene-YFL037W_AKU4011 | rna-NM_001179929.1_AKU4011 | cds-NP_116616.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000182.1:15744-17117:- | gene-YFL037W_BG1 | rna-NM_001179929.1_BG1 | cds-NP_116616.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:51555-52928:+ | gene-YFL037W_Bruggeman | rna-NM_001179929.1_Bruggeman | cds-NP_116616.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:56440-57813:+ | gene-YFL037W_CAT1 | rna-NM_001179929.1_CAT1 | cds-NP_116616.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:53349-54722:+ | gene-YFL037W_CBS1585 | rna-NM_001179929.1_CBS1585 | cds-NP_116616.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:26987-28360:+ | gene-YFL037W_CBS436 | rna-NM_001179929.1_CBS436 | cds-NP_116616.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:53588-54960:+ | gene-YFL037W_CBS6412 | rna-NM_001179929.1_CBS6412 | cds-NP_116616.1_CBS6412 | 94.4 | 98.1 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:55747-57120:+ | gene-YFL037W_CBS6413 | rna-NM_001179929.1_CBS6413 | cds-NP_116616.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:52661-54034:+ | gene-YFL037W_CENPK1137D | rna-NM_001179929.1_CENPK1137D | cds-NP_116616.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:52014-53387:+ | gene-YFL037W_EthanolRed | rna-NM_001179929.1_EthanolRed | cds-NP_116616.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:53223-54596:+ | gene-YFL037W_FaliES1 | rna-NM_001179929.1_FaliES1 | cds-NP_116616.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000448.1:61680-63053:+ | gene-YFL037W_JAY291 | rna-NM_001179929.1_JAY291 | cds-NP_116616.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:53641-55014:+ | gene-YFL037W_MUCL30387 | rna-NM_001179929.1_MUCL30387 | cds-NP_116616.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:51549-52922:+ | gene-YFL037W_MUCL30388 | rna-NM_001179929.1_MUCL30388 | cds-NP_116616.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:51865-53238:+ | gene-YFL037W_MUCL39482 | rna-NM_001179929.1_MUCL39482 | cds-NP_116616.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:49571-50944:+ | gene-YFL037W_MUCL42920 | rna-NM_001179929.1_MUCL42920 | cds-NP_116616.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:56335-57708:+ | gene-YFL037W_NCIM3186 | rna-NM_001179929.1_NCIM3186 | cds-NP_116616.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:52936-54309:+ | gene-YFL037W_NCYC1407 | rna-NM_001179929.1_NCYC1407 | cds-NP_116616.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:72835-74208:+ | gene-YFL037W_PE2H3 | rna-NM_001179929.1_PE2H3 | cds-NP_116616.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:72386-73759:+ | gene-YFL037W_PE2H4 | rna-NM_001179929.1_PE2H4 | cds-NP_116616.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:56336-57709:+ | gene-YFL037W_S288C | rna-NM_001179929.1_S288C | cds-NP_116616.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:277927-279300:- | gene-YFL037W_SA1 | rna-NM_001179929.1_SA1 | cds-NP_116616.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:52411-53784:+ | gene-YFL037W_ThermosaccDry | rna-NM_001179929.1_ThermosaccDry | cds-NP_116616.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:60961-62334:+ | gene-YFL037W_VR1 | rna-NM_001179929.1_VR1 | cds-NP_116616.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000012.1:37707-39080:+ | gene-YFL037W_ZTW1 | rna-NM_001179929.1_ZTW1 | cds-NP_116616.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:76756-78129:+ | gene-YFL037W_Sparadoxus | rna-NM_001179929.1_Sparadoxus | cds-NP_116616.1_Sparadoxus | 94.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |