Gene name: TUB1
Reference locus (S288C): YML085C
Gene biotype: protein_coding
Description: Tubulin alpha-1 chain; Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; relative distribution to nuclear foci increases upon DNA replication stress; TUB1 has a paralog, TUB3, that arose from the whole genome duplication
Top 10 interactors (score): PAC2 (0.999); TUB2 (0.999); DYN1 (0.998); BIM1 (0.998); STU2 (0.998); ALF1 (0.986); ACT1 (0.979); KAR3 (0.974); KIP3 (0.96); HHT2 (0.96); TUB3 (0.96); HHT1 (0.96); CDC31 (0.96); RBL2 (0.959); SPC98 (0.952); CIN8 (0.947); SPC97 (0.945); TDH1 (0.938); TDH2 (0.938); NDC80 (0.938)
Homologues (species, bitscore): TUBA4A (Homo sapiens, 728.0); Tuba4a (Mus musculus, 728.0); tuba8l2 (Danio rerio, 728.4); tuba4b (Xenopus tropicalis, 730.7); tubA84B (Drosophila melanogaster, 723.8); tba-2 (Caenorhabditis elegans, 719.2); TUA6 (Arabidopsis thaliana, 677.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:91662-93122:- | gene-YML085C_AKU4011 | rna-NM_001182444.1_AKU4011 | cds-NP_013625.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:383003-384463:+ | gene-YML085C_BG1 | rna-NM_001182444.1_BG1 | cds-NP_013625.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:97834-99294:- | gene-YML085C_Bruggeman | rna-NM_001182444.1_Bruggeman | cds-NP_013625.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:99511-100971:- | gene-YML085C_CAT1 | rna-NM_001182444.1_CAT1 | cds-NP_013625.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:91667-93127:- | gene-YML085C_CBS1585 | rna-NM_001182444.1_CBS1585 | cds-NP_013625.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:97605-99065:- | gene-YML085C_CBS436 | rna-NM_001182444.1_CBS436 | cds-NP_013625.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:92379-93839:- | gene-YML085C_CBS6412 | rna-NM_001182444.1_CBS6412 | cds-NP_013625.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:90852-92312:- | gene-YML085C_CBS6413 | rna-NM_001182444.1_CBS6413 | cds-NP_013625.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:92653-94113:- | gene-YML085C_CENPK1137D | rna-NM_001182444.1_CENPK1137D | cds-NP_013625.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:91939-93398:- | gene-YML085C_EthanolRed | rna-NM_001182444.1_EthanolRed | cds-NP_013625.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:92448-93907:- | gene-YML085C_FaliES1 | rna-NM_001182444.1_FaliES1 | cds-NP_013625.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000366.1:63195-64655:+ | gene-YML085C_JAY291 | rna-NM_001182444.1_JAY291 | cds-NP_013625.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:96358-97818:- | gene-YML085C_MUCL30387 | rna-NM_001182444.1_MUCL30387 | cds-NP_013625.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:99506-100966:- | gene-YML085C_MUCL30388 | rna-NM_001182444.1_MUCL30388 | cds-NP_013625.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:91678-93138:- | gene-YML085C_MUCL39482 | rna-NM_001182444.1_MUCL39482 | cds-NP_013625.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:96416-97876:- | gene-YML085C_MUCL42920 | rna-NM_001182444.1_MUCL42920 | cds-NP_013625.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:97895-99354:- | gene-YML085C_NCIM3186 | rna-NM_001182444.1_NCIM3186 | cds-NP_013625.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:92477-93937:- | gene-YML085C_NCYC1407 | rna-NM_001182444.1_NCYC1407 | cds-NP_013625.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:97842-99302:- | gene-YML085C_PE2H3 | rna-NM_001182444.1_PE2H3 | cds-NP_013625.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:97780-99240:- | gene-YML085C_PE2H4 | rna-NM_001182444.1_PE2H4 | cds-NP_013625.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:97941-99400:- | gene-YML085C_S288C | rna-NM_001182444.1_S288C | cds-NP_013625.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000041.1:84861-86321:+ | gene-YML085C_SA1 | rna-NM_001182444.1_SA1 | cds-NP_013625.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:91740-93199:- | gene-YML085C_ThermosaccDry | rna-NM_001182444.1_ThermosaccDry | cds-NP_013625.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:96131-97591:- | gene-YML085C_VR1 | rna-NM_001182444.1_VR1 | cds-NP_013625.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:71275-72732:- | gene-YML085C_ZTW1 | rna-NM_001182444.1_ZTW1 | cds-NP_013625.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:102460-103914:- | gene-YML085C_Sparadoxus | rna-NM_001182444.1_Sparadoxus | cds-NP_013625.1_Sparadoxus | 94.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |