Gene name: TSR4
Reference locus (S288C): YOL022C
Gene biotype: protein_coding
Description: 20S rRNA accumulation protein 4; Cytoplasmic protein required for correct processing of 20S pre-rRNA; protein required for processing of the 20S pre-rRNA at site D to generate mature 18S rRNA; essential gene in S288C background but not in CEN.PK2
Top 10 interactors (score): RPF1 (0.948); RPS2 (0.942); LIA1 (0.907); BCP1 (0.901); IPI1 (0.901); NOG1 (0.896); UTP25 (0.89); BUD22 (0.885); ENP1 (0.876); BRX1 (0.873); TSR3 (0.866); RRP36 (0.852); NOP7 (0.833); SYO1 (0.821); RIO2 (0.811); KRR1 (0.804); YTM1 (0.795); NIP7 (0.79); SGD1 (0.788); UTP23 (0.767)
Homologues (species, bitscore): PDCD2L (Homo sapiens, 51.6); Pdcd2 (Mus musculus, 56.2); pdcd2 (Danio rerio, 72.0); pdcd2l (Xenopus tropicalis, 52.4); Zfrp8 (Drosophila melanogaster, 59.3); pdcd-2 (Caenorhabditis elegans, 50.8); AT5G64830 (Arabidopsis thaliana, 79.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:264660-265886:- | gene-YOL022C_AKU4011 | rna-NM_001183276.2_AKU4011 | cds-NP_014620.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:80248-81474:- | gene-YOL022C_BG1 | rna-NM_001183276.2_BG1 | cds-NP_014620.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:267485-268711:- | gene-YOL022C_Bruggeman | rna-NM_001183276.2_Bruggeman | cds-NP_014620.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:265362-266588:- | gene-YOL022C_CAT1 | rna-NM_001183276.2_CAT1 | cds-NP_014620.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:259338-260564:- | gene-YOL022C_CBS1585 | rna-NM_001183276.2_CBS1585 | cds-NP_014620.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:263577-264803:- | gene-YOL022C_CBS436 | rna-NM_001183276.2_CBS436 | cds-NP_014620.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:258694-259920:- | gene-YOL022C_CBS6412 | rna-NM_001183276.2_CBS6412 | cds-NP_014620.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:266221-267447:- | gene-YOL022C_CBS6413 | rna-NM_001183276.2_CBS6413 | cds-NP_014620.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:279971-281197:- | gene-YOL022C_CENPK1137D | rna-NM_001183276.2_CENPK1137D | cds-NP_014620.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:261487-262713:- | gene-YOL022C_EthanolRed | rna-NM_001183276.2_EthanolRed | cds-NP_014620.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:264814-266040:- | gene-YOL022C_FaliES1 | rna-NM_001183276.2_FaliES1 | cds-NP_014620.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000018.1:699-1925:+ | gene-YOL022C_JAY291 | rna-NM_001183276.2_JAY291 | cds-NP_014620.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:271418-272644:- | gene-YOL022C_MUCL30387 | rna-NM_001183276.2_MUCL30387 | cds-NP_014620.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:274860-276086:- | gene-YOL022C_MUCL30388 | rna-NM_001183276.2_MUCL30388 | cds-NP_014620.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:266823-268049:- | gene-YOL022C_MUCL39482 | rna-NM_001183276.2_MUCL39482 | cds-NP_014620.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:281743-282969:- | gene-YOL022C_MUCL42920 | rna-NM_001183276.2_MUCL42920 | cds-NP_014620.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:280161-281387:- | gene-YOL022C_NCIM3186 | rna-NM_001183276.2_NCIM3186 | cds-NP_014620.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:273555-274781:- | gene-YOL022C_NCYC1407 | rna-NM_001183276.2_NCYC1407 | cds-NP_014620.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:255942-257168:- | gene-YOL022C_PE2H3 | rna-NM_001183276.2_PE2H3 | cds-NP_014620.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:266916-268142:- | gene-YOL022C_PE2H4 | rna-NM_001183276.2_PE2H4 | cds-NP_014620.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:280272-281498:- | gene-YOL022C_S288C | rna-NM_001183276.2_S288C | cds-NP_014620.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:248268-249494:- | gene-YOL022C_SA1 | rna-NM_001183276.2_SA1 | cds-NP_014620.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:263385-264611:- | gene-YOL022C_ThermosaccDry | rna-NM_001183276.2_ThermosaccDry | cds-NP_014620.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:263422-264648:- | gene-YOL022C_VR1 | rna-NM_001183276.2_VR1 | cds-NP_014620.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:262980-264206:- | gene-YOL022C_ZTW1 | rna-NM_001183276.2_ZTW1 | cds-NP_014620.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:271374-272600:- | gene-YOL022C_Sparadoxus | rna-NM_001183276.2_Sparadoxus | cds-NP_014620.1_Sparadoxus | 89.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |