Gene name: TSR3
Reference locus (S288C): YOR006C
Gene biotype: protein_coding
Description: Ribosome biogenesis protein TSR3; Protein required for 20S pre-rRNA processing; involved in processing of the 20S pre-rRNA at site D to generate mature 18S rRNA; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus; relative distribution to the nucleus increases upon DNA replication stress
Top 10 interactors (score): TRM12 (0.923); YIL025C (0.906); BUD23 (0.903); NOB1 (0.872); TSR4 (0.866); RRP8 (0.858); EMG1 (0.839); UTP25 (0.823); TRM10 (0.817); LTV1 (0.815); RRP36 (0.792); BMT5 (0.764); YCR087C-A (0.761); SDH8 (0.76); YDL199C (0.747); SGD1 (0.739); TSR2 (0.735); BUD22 (0.731); SYO1 (0.73); BCP1 (0.725)
Homologues (species, bitscore): TSR3 (Homo sapiens, 216.1); Tsr3 (Mus musculus, 213.8); tsr3 (Danio rerio, 207.6); tsr3 (Xenopus tropicalis, 209.9); CG4338 (Drosophila melanogaster, 200.3); F52C12.2 (Caenorhabditis elegans, 203.4); AT5G10070 (Arabidopsis thaliana, 183.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:322042-322983:- | gene-YOR006C_AKU4011 | rna-NM_001183425.1_AKU4011 | cds-NP_014648.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:137660-138601:- | gene-YOR006C_BG1 | rna-NM_001183425.1_BG1 | cds-NP_014648.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:324813-325754:- | gene-YOR006C_Bruggeman | rna-NM_001183425.1_Bruggeman | cds-NP_014648.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:322968-323909:- | gene-YOR006C_CAT1 | rna-NM_001183425.1_CAT1 | cds-NP_014648.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:316716-317657:- | gene-YOR006C_CBS1585 | rna-NM_001183425.1_CBS1585 | cds-NP_014648.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:320990-321931:- | gene-YOR006C_CBS436 | rna-NM_001183425.1_CBS436 | cds-NP_014648.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:316022-316963:- | gene-YOR006C_CBS6412 | rna-NM_001183425.1_CBS6412 | cds-NP_014648.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:323553-324494:- | gene-YOR006C_CBS6413 | rna-NM_001183425.1_CBS6413 | cds-NP_014648.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:337363-338304:- | gene-YOR006C_CENPK1137D | rna-NM_001183425.1_CENPK1137D | cds-NP_014648.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:318803-319744:- | gene-YOR006C_EthanolRed | rna-NM_001183425.1_EthanolRed | cds-NP_014648.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:322130-323071:- | gene-YOR006C_FaliES1 | rna-NM_001183425.1_FaliES1 | cds-NP_014648.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000015.1:6161-7102:+ | gene-YOR006C_JAY291 | rna-NM_001183425.1_JAY291 | cds-NP_014648.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:329027-329968:- | gene-YOR006C_MUCL30387 | rna-NM_001183425.1_MUCL30387 | cds-NP_014648.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:332463-333404:- | gene-YOR006C_MUCL30388 | rna-NM_001183425.1_MUCL30388 | cds-NP_014648.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:324199-325140:- | gene-YOR006C_MUCL39482 | rna-NM_001183425.1_MUCL39482 | cds-NP_014648.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:339053-339994:- | gene-YOR006C_MUCL42920 | rna-NM_001183425.1_MUCL42920 | cds-NP_014648.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:337569-338510:- | gene-YOR006C_NCIM3186 | rna-NM_001183425.1_NCIM3186 | cds-NP_014648.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:330884-331825:- | gene-YOR006C_NCYC1407 | rna-NM_001183425.1_NCYC1407 | cds-NP_014648.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:325584-326525:- | gene-YOR006C_PE2H3 | rna-NM_001183425.1_PE2H3 | cds-NP_014648.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:335963-336904:- | gene-YOR006C_PE2H4 | rna-NM_001183425.1_PE2H4 | cds-NP_014648.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:337680-338621:- | gene-YOR006C_S288C | rna-NM_001183425.1_S288C | cds-NP_014648.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:305651-306592:- | gene-YOR006C_SA1 | rna-NM_001183425.1_SA1 | cds-NP_014648.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:320701-321642:- | gene-YOR006C_ThermosaccDry | rna-NM_001183425.1_ThermosaccDry | cds-NP_014648.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:321535-322476:- | gene-YOR006C_VR1 | rna-NM_001183425.1_VR1 | cds-NP_014648.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:55365-56306:- | gene-YOR006C_ZTW1 | rna-NM_001183425.1_ZTW1 | cds-NP_014648.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:329157-330107:- | gene-YOR006C_Sparadoxus | rna-NM_001183425.1_Sparadoxus | cds-NP_014648.1_Sparadoxus | 87.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |