Gene name: TSR2
Reference locus (S288C): YLR435W
Gene biotype: protein_coding
Description: Pre-rRNA-processing protein TSR2; Protein with a potential role in pre-rRNA processing; Belongs to the TSR2 family
Top 10 interactors (score): RPS26A (0.999); TSR1 (0.995); RPS26B (0.992); RRB1 (0.986); RIO2 (0.985); MRT4 (0.984); ENP1 (0.984); PNO1 (0.983); RPF2 (0.983); BRX1 (0.979); FCF2 (0.975); RRS1 (0.975); EBP2 (0.974); NOP15 (0.974); MAK16 (0.973); NIP7 (0.971); RPA43 (0.971); NOP4 (0.969); KRR1 (0.968); LOC1 (0.967)
Homologues (species, bitscore): TSR2 (Homo sapiens, 67.4); Tsr2 (Mus musculus, 55.5); tsr2 (Danio rerio, 58.2); TSR2 (Xenopus tropicalis, 75.1); Y51H4A.15 (Caenorhabditis elegans, 55.8); AT5G27990 (Arabidopsis thaliana, 79.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:944636-945253:+ | gene-YLR435W_AKU4011 | rna-NM_001182323.3_AKU4011 | cds-NP_013539.4_AKU4011 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:177090-177707:+ | gene-YLR435W_BG1 | rna-NM_001182323.3_BG1 | cds-NP_013539.4_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:982941-983558:+ | gene-YLR435W_Bruggeman | rna-NM_001182323.3_Bruggeman | cds-NP_013539.4_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:978955-979572:+ | gene-YLR435W_CAT1 | rna-NM_001182323.3_CAT1 | cds-NP_013539.4_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:980233-980850:+ | gene-YLR435W_CBS1585 | rna-NM_001182323.3_CBS1585 | cds-NP_013539.4_CBS1585 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:969574-970191:+ | gene-YLR435W_CBS436 | rna-NM_001182323.3_CBS436 | cds-NP_013539.4_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:1016273-1016890:+ | gene-YLR435W_CBS6412 | rna-NM_001182323.3_CBS6412 | cds-NP_013539.4_CBS6412 | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:981018-981635:+ | gene-YLR435W_CBS6413 | rna-NM_001182323.3_CBS6413 | cds-NP_013539.4_CBS6413 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:990995-991612:+ | gene-YLR435W_CENPK1137D | rna-NM_001182323.3_CENPK1137D | cds-NP_013539.4_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:937661-938278:+ | gene-YLR435W_EthanolRed | rna-NM_001182323.3_EthanolRed | cds-NP_013539.4_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:972932-973549:+ | gene-YLR435W_FaliES1 | rna-NM_001182323.3_FaliES1 | cds-NP_013539.4_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000194.1:45139-45756:- | gene-YLR435W_JAY291 | rna-NM_001182323.3_JAY291 | cds-NP_013539.4_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:981802-982419:+ | gene-YLR435W_MUCL30387 | rna-NM_001182323.3_MUCL30387 | cds-NP_013539.4_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:989159-989776:+ | gene-YLR435W_MUCL30388 | rna-NM_001182323.3_MUCL30388 | cds-NP_013539.4_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:981453-982070:+ | gene-YLR435W_MUCL39482 | rna-NM_001182323.3_MUCL39482 | cds-NP_013539.4_MUCL39482 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:981950-982567:+ | gene-YLR435W_MUCL42920 | rna-NM_001182323.3_MUCL42920 | cds-NP_013539.4_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:1006352-1006969:+ | gene-YLR435W_NCIM3186 | rna-NM_001182323.3_NCIM3186 | cds-NP_013539.4_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:990881-991498:+ | gene-YLR435W_NCYC1407 | rna-NM_001182323.3_NCYC1407 | cds-NP_013539.4_NCYC1407 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:977330-977947:+ | gene-YLR435W_PE2H3 | rna-NM_001182323.3_PE2H3 | cds-NP_013539.4_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:977074-977691:+ | gene-YLR435W_PE2H4 | rna-NM_001182323.3_PE2H4 | cds-NP_013539.4_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:1006378-1006995:+ | gene-YLR435W_S288C | rna-NM_001182323.3_S288C | cds-NP_013539.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:52963-53580:- | gene-YLR435W_SA1 | rna-NM_001182323.3_SA1 | cds-NP_013539.4_SA1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:976011-976628:+ | gene-YLR435W_ThermosaccDry | rna-NM_001182323.3_ThermosaccDry | cds-NP_013539.4_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:982435-983052:+ | gene-YLR435W_VR1 | rna-NM_001182323.3_VR1 | cds-NP_013539.4_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:306284-306901:+ | gene-YLR435W_ZTW1 | rna-NM_001182323.3_ZTW1 | cds-NP_013539.4_ZTW1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:955434-956048:+ | gene-YLR435W_Sparadoxus | rna-NM_001182323.3_Sparadoxus | cds-NP_013539.4_Sparadoxus | 88.3 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |