Gene name: TSC3
Reference locus (S288C): YBR058C-A
Gene biotype: protein_coding
Description: Protein that stimulates the activity of serine palmitoyltransferase; involved in sphingolipid biosynthesis; Lcb1p and Lcb2p are the two components of serine palmitoyltransferase
Top 10 interactors (score): LCB2 (0.998); LCB1 (0.996); ORM1 (0.994); SAC1 (0.993); ORM2 (0.993); TSC10 (0.869); CSG2 (0.811); ISC1 (0.776); LIP1 (0.755); LAC1 (0.746); SHR5 (0.72); ERF2 (0.72); LAG1 (0.711); AUR1 (0.692); SUR2 (0.656); YPK1 (0.65); DPL1 (0.607); SLM2 (0.57); KES1 (0.565); LCB4 (0.564)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:338725-338967:- | gene-YBR058C-A_AKU4011 | rna-NM_001184442.3_AKU4011 | cds-NP_116327.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:328953-329195:- | gene-YBR058C-A_BG1 | rna-NM_001184442.3_BG1 | cds-NP_116327.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:339460-339702:- | gene-YBR058C-A_Bruggeman | rna-NM_001184442.3_Bruggeman | cds-NP_116327.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:343222-343464:- | gene-YBR058C-A_CAT1 | rna-NM_001184442.3_CAT1 | cds-NP_116327.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:331021-331263:- | gene-YBR058C-A_CBS1585 | rna-NM_001184442.3_CBS1585 | cds-NP_116327.3_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:339056-339298:- | gene-YBR058C-A_CBS436 | rna-NM_001184442.3_CBS436 | cds-NP_116327.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:429239-429481:- | gene-YBR058C-A_CBS6412 | rna-NM_001184442.3_CBS6412 | cds-NP_116327.3_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:336145-336387:- | gene-YBR058C-A_CBS6413 | rna-NM_001184442.3_CBS6413 | cds-NP_116327.3_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:350086-350328:- | gene-YBR058C-A_CENPK1137D | rna-NM_001184442.3_CENPK1137D | cds-NP_116327.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:465508-465750:- | gene-YBR058C-A_EthanolRed | rna-NM_001184442.3_EthanolRed | cds-NP_116327.3_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:354786-355028:- | gene-YBR058C-A_FaliES1 | rna-NM_001184442.3_FaliES1 | cds-NP_116327.3_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000124.1:2680-2922:- | gene-YBR058C-A_JAY291 | rna-NM_001184442.3_JAY291 | cds-NP_116327.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:341084-341326:- | gene-YBR058C-A_MUCL30387 | rna-NM_001184442.3_MUCL30387 | cds-NP_116327.3_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:340862-341104:- | gene-YBR058C-A_MUCL30388 | rna-NM_001184442.3_MUCL30388 | cds-NP_116327.3_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:331009-331251:- | gene-YBR058C-A_MUCL39482 | rna-NM_001184442.3_MUCL39482 | cds-NP_116327.3_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:338208-338450:- | gene-YBR058C-A_MUCL42920 | rna-NM_001184442.3_MUCL42920 | cds-NP_116327.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:356121-356363:- | gene-YBR058C-A_NCIM3186 | rna-NM_001184442.3_NCIM3186 | cds-NP_116327.3_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:331927-332169:- | gene-YBR058C-A_NCYC1407 | rna-NM_001184442.3_NCYC1407 | cds-NP_116327.3_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:344151-344393:- | gene-YBR058C-A_PE2H3 | rna-NM_001184442.3_PE2H3 | cds-NP_116327.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:341827-342069:- | gene-YBR058C-A_PE2H4 | rna-NM_001184442.3_PE2H4 | cds-NP_116327.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:356324-356566:- | gene-YBR058C-A_S288C | rna-NM_001184442.3_S288C | cds-NP_116327.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:120955-121197:+ | gene-YBR058C-A_SA1 | rna-NM_001184442.3_SA1 | cds-NP_116327.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:353797-354039:- | gene-YBR058C-A_ThermosaccDry | rna-NM_001184442.3_ThermosaccDry | cds-NP_116327.3_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:335746-335988:- | gene-YBR058C-A_VR1 | rna-NM_001184442.3_VR1 | cds-NP_116327.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:329484-329726:- | gene-YBR058C-A_ZTW1 | rna-NM_001184442.3_ZTW1 | cds-NP_116327.3_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:366490-366732:- | gene-YBR058C-A_Sparadoxus | rna-NM_001184442.3_Sparadoxus | cds-NP_116327.3_Sparadoxus | 91.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |