Gene name: TRZ1
Reference locus (S288C): YKR079C
Gene biotype: protein_coding
Description: Ribonuclease Z; tRNA 3'-end processing endonuclease tRNase Z; also localized to mitochondria and interacts genetically with Rex2 exonuclease; homolog of the human candidate prostate cancer susceptibility gene ELAC2
Top 10 interactors (score): UTP13 (0.988); RRP12 (0.983); NOP14 (0.977); NOC2 (0.97); UTP10 (0.959); DIP2 (0.958); TSR1 (0.954); UTP21 (0.951); UTP4 (0.946); SPB1 (0.936); DBP9 (0.935); NOC3 (0.932); DRS1 (0.929); RPA135 (0.927); NUC1 (0.927); SDA1 (0.921); CCA1 (0.921); PUF6 (0.918); UTP22 (0.917); ECM16 (0.917)
Homologues (species, bitscore): ELAC2 (Homo sapiens, 207.2); Elac2 (Mus musculus, 214.5); elac2 (Danio rerio, 203.8); elac2 (Xenopus tropicalis, 174.1); JhI-1 (Drosophila melanogaster, 237.3); hoe-1 (Caenorhabditis elegans, 130.6); TRZ3 (Arabidopsis thaliana, 211.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:572819-575335:- | gene-YKR079C_AKU4011 | rna-NM_001179869.1_AKU4011 | cds-NP_013005.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:68892-71408:+ | gene-YKR079C_BG1 | rna-NM_001179869.1_BG1 | cds-NP_013005.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:595396-597912:- | gene-YKR079C_Bruggeman | rna-NM_001179869.1_Bruggeman | cds-NP_013005.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:590916-593432:- | gene-YKR079C_CAT1 | rna-NM_001179869.1_CAT1 | cds-NP_013005.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:585306-587822:- | gene-YKR079C_CBS1585 | rna-NM_001179869.1_CBS1585 | cds-NP_013005.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:583690-586206:- | gene-YKR079C_CBS436 | rna-NM_001179869.1_CBS436 | cds-NP_013005.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:568594-571110:- | gene-YKR079C_CBS6412 | rna-NM_001179869.1_CBS6412 | cds-NP_013005.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:585124-587640:- | gene-YKR079C_CBS6413 | rna-NM_001179869.1_CBS6413 | cds-NP_013005.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:586443-588959:- | gene-YKR079C_CENPK1137D | rna-NM_001179869.1_CENPK1137D | cds-NP_013005.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:582630-585146:- | gene-YKR079C_EthanolRed | rna-NM_001179869.1_EthanolRed | cds-NP_013005.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:586525-589041:- | gene-YKR079C_FaliES1 | rna-NM_001179869.1_FaliES1 | cds-NP_013005.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000426.1:55893-58409:+ | gene-YKR079C_JAY291 | rna-NM_001179869.1_JAY291 | cds-NP_013005.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:594892-597408:- | gene-YKR079C_MUCL30387 | rna-NM_001179869.1_MUCL30387 | cds-NP_013005.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:589235-591751:- | gene-YKR079C_MUCL30388 | rna-NM_001179869.1_MUCL30388 | cds-NP_013005.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:584147-586663:- | gene-YKR079C_MUCL39482 | rna-NM_001179869.1_MUCL39482 | cds-NP_013005.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:590169-592685:- | gene-YKR079C_MUCL42920 | rna-NM_001179869.1_MUCL42920 | cds-NP_013005.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:586778-589294:- | gene-YKR079C_NCIM3186 | rna-NM_001179869.1_NCIM3186 | cds-NP_013005.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:584559-587075:- | gene-YKR079C_NCYC1407 | rna-NM_001179869.1_NCYC1407 | cds-NP_013005.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:609725-612241:- | gene-YKR079C_PE2H3 | rna-NM_001179869.1_PE2H3 | cds-NP_013005.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:594129-596645:- | gene-YKR079C_PE2H4 | rna-NM_001179869.1_PE2H4 | cds-NP_013005.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:586789-589305:- | gene-YKR079C_S288C | rna-NM_001179869.1_S288C | cds-NP_013005.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000029.1:92545-95061:+ | gene-YKR079C_SA1 | rna-NM_001179869.1_SA1 | cds-NP_013005.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:585772-588288:- | gene-YKR079C_ThermosaccDry | rna-NM_001179869.1_ThermosaccDry | cds-NP_013005.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:585035-587551:- | gene-YKR079C_VR1 | rna-NM_001179869.1_VR1 | cds-NP_013005.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:582754-585270:- | gene-YKR079C_ZTW1 | rna-NM_001179869.1_ZTW1 | cds-NP_013005.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:608000-610516:- | gene-YKR079C_Sparadoxus | rna-NM_001179869.1_Sparadoxus | cds-NP_013005.1_Sparadoxus | 89.5 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |