TRT2 (YNCK0002C)

Gene profile

Gene name: TRT2
Reference locus (S288C): YNCK0002C
Gene biotype: tRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005305.1:33049-33120:- gene-YNCK0002C_AKU4011 rna-YNCK0002C_AKU4011 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000030.1:10133-10204:- gene-YNCK0002C_BG1 rna-YNCK0002C_BG1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005513.1:50721-50792:- gene-YNCK0002C_Bruggeman rna-YNCK0002C_Bruggeman Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005529.1:45420-45491:- gene-YNCK0002C_CAT1 rna-YNCK0002C_CAT1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005369.1:45061-45132:- gene-YNCK0002C_CBS1585 rna-YNCK0002C_CBS1585 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005353.1:44262-44333:- gene-YNCK0002C_CBS436 rna-YNCK0002C_CBS436 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005321.1:45698-45769:- gene-YNCK0002C_CBS6413 rna-YNCK0002C_CBS6413 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001532.1:46513-46584:- gene-YNCK0002C_CENPK1137D rna-YNCK0002C_CENPK1137D Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005481.1:44532-44603:- gene-YNCK0002C_EthanolRed rna-YNCK0002C_EthanolRed Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005545.1:44591-44662:- gene-YNCK0002C_FaliES1 rna-YNCK0002C_FaliES1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000006.2:44205-44276:- gene-YNCK0002C_JAY291 rna-YNCK0002C_JAY291 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005417.1:52766-52837:- gene-YNCK0002C_MUCL30387 rna-YNCK0002C_MUCL30387 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005449.1:47344-47415:- gene-YNCK0002C_1_MUCL30388 Unknown Unknown 100.0 100.0 Unannotated 3 2 0 Unknown Unknown non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000095.1:41-112:- gene-YNCK0002C_2_MUCL30388 Unknown Unknown 100.0 100.0 Unannotated 3 3 0 Unknown Unknown non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005449.1:47095-47166:- gene-YNCK0002C_MUCL30388 rna-YNCK0002C_MUCL30388 Unknown 100.0 100.0 Unannotated 3 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005289.1:45118-45189:- gene-YNCK0002C_MUCL39482 rna-YNCK0002C_MUCL39482 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005433.1:48412-48483:- gene-YNCK0002C_MUCL42920 rna-YNCK0002C_MUCL42920 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011820.1:46724-46795:- gene-YNCK0002C_NCIM3186 rna-YNCK0002C_NCIM3186 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005273.1:45142-45213:- gene-YNCK0002C_NCYC1407 rna-YNCK0002C_NCYC1407 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994150.1:52840-52911:- gene-YNCK0002C_PE2H3 rna-YNCK0002C_PE2H3 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999882.1:49038-49109:- gene-YNCK0002C_PE2H4 rna-YNCK0002C_PE2H4 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001143.9:46735-46806:- gene-YNCK0002C_S288C rna-YNCK0002C_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000092.1:21067-21138:+ gene-YNCK0002C_SA1 rna-YNCK0002C_SA1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005497.1:45339-45410:- gene-YNCK0002C_ThermosaccDry rna-YNCK0002C_ThermosaccDry Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005465.1:44445-44516:- gene-YNCK0002C_VR1 rna-YNCK0002C_VR1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000022.1:44253-44324:- gene-YNCK0002C_ZTW1 rna-YNCK0002C_ZTW1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047497.1:53002-53073:- gene-YNCK0002C_Sparadoxus rna-YNCK0002C_Sparadoxus Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files