Gene name: TRS85
Reference locus (S288C): YDR108W
Gene biotype: protein_coding
Description: Trafficking protein particle complex III-specific subunit 85; Component of transport protein particle (TRAPP) complex III; TRAPPIII is a multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating endosome-Golgi traffic and required for membrane expansion during autophagy and the CVT pathway; directs Ypt1p to the PAS; late post-replication meiotic role
Top 10 interactors (score): TRS120 (0.999); TRS31 (0.999); TRS23 (0.999); BET5 (0.999); TRS33 (0.999); TRS20 (0.999); TRS130 (0.999); BET3 (0.999); YPT1 (0.995); TRS65 (0.995); TCA17 (0.988); COG8 (0.95); COG6 (0.912); CFT2 (0.898); YPT31 (0.898); YPT32 (0.898); ATG9 (0.897); VPS52 (0.833); ATG11 (0.824); UFE1 (0.822)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:642199-644295:+ | gene-YDR108W_AKU4011 | rna-NM_001180416.3_AKU4011 | cds-NP_010393.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:480577-482673:- | gene-YDR108W_BG1 | rna-NM_001180416.3_BG1 | cds-NP_010393.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:674287-676383:+ | gene-YDR108W_Bruggeman | rna-NM_001180416.3_Bruggeman | cds-NP_010393.3_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:660959-663049:+ | gene-YDR108W_CAT1 | rna-NM_001180416.3_CAT1 | cds-NP_010393.3_CAT1 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:633217-635313:+ | gene-YDR108W_CBS1585 | rna-NM_001180416.3_CBS1585 | cds-NP_010393.3_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:659121-661217:+ | gene-YDR108W_CBS436 | rna-NM_001180416.3_CBS436 | cds-NP_010393.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:629597-631693:+ | gene-YDR108W_CBS6412 | rna-NM_001180416.3_CBS6412 | cds-NP_010393.3_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:658654-660750:+ | gene-YDR108W_CBS6413 | rna-NM_001180416.3_CBS6413 | cds-NP_010393.3_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:663681-665777:+ | gene-YDR108W_CENPK1137D | rna-NM_001180416.3_CENPK1137D | cds-NP_010393.3_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:643982-646078:+ | gene-YDR108W_EthanolRed | rna-NM_001180416.3_EthanolRed | cds-NP_010393.3_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:650776-652872:+ | gene-YDR108W_FaliES1 | rna-NM_001180416.3_FaliES1 | cds-NP_010393.3_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000002.1:2873-4970:+ | gene-YDR108W_JAY291 | rna-NM_001180416.3_JAY291 | cds-NP_010393.3_JAY291 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:660199-662295:+ | gene-YDR108W_MUCL30387 | rna-NM_001180416.3_MUCL30387 | cds-NP_010393.3_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:649217-651313:+ | gene-YDR108W_MUCL30388 | rna-NM_001180416.3_MUCL30388 | cds-NP_010393.3_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:634586-636682:+ | gene-YDR108W_MUCL39482 | rna-NM_001180416.3_MUCL39482 | cds-NP_010393.3_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:572537-574633:+ | gene-YDR108W_MUCL42920 | rna-NM_001180416.3_MUCL42920 | cds-NP_010393.3_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:671192-673288:+ | gene-YDR108W_NCIM3186 | rna-NM_001180416.3_NCIM3186 | cds-NP_010393.3_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:633989-636085:+ | gene-YDR108W_NCYC1407 | rna-NM_001180416.3_NCYC1407 | cds-NP_010393.3_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:653310-655406:+ | gene-YDR108W_PE2H3 | rna-NM_001180416.3_PE2H3 | cds-NP_010393.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:652615-654711:+ | gene-YDR108W_PE2H4 | rna-NM_001180416.3_PE2H4 | cds-NP_010393.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:671269-673365:+ | gene-YDR108W_S288C | rna-NM_001180416.3_S288C | cds-NP_010393.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:19926-22022:+ | gene-YDR108W_SA1 | rna-NM_001180416.3_SA1 | cds-NP_010393.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:650305-652401:+ | gene-YDR108W_ThermosaccDry | rna-NM_001180416.3_ThermosaccDry | cds-NP_010393.3_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:663573-665669:+ | gene-YDR108W_VR1 | rna-NM_001180416.3_VR1 | cds-NP_010393.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:647887-649983:+ | gene-YDR108W_ZTW1 | rna-NM_001180416.3_ZTW1 | cds-NP_010393.3_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:652351-654447:+ | gene-YDR108W_Sparadoxus | rna-NM_001180416.3_Sparadoxus | cds-NP_010393.3_Sparadoxus | 89.3 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |