Gene name: TRS33
Reference locus (S288C): YOR115C
Gene biotype: protein_coding
Description: Core component of TRAPP complexes I, II and IV; transport protein particle (TRAPP) complexes are related multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII, and IV); proposed subunit of a novel complex, TRAPPIV, that may function redundantly with TRAPPIII as a GEF that activates Ypt1 during autophagy; Belongs to the TRAPP small subunits family. BET3 subfamily
Top 10 interactors (score): TRS120 (0.999); TRS20 (0.999); TRS130 (0.999); TRS85 (0.999); TRS31 (0.999); TRS23 (0.999); BET3 (0.999); BET5 (0.999); TRS65 (0.998); TCA17 (0.997); YPT1 (0.991); SEC23 (0.969); MRS6 (0.939); YPT31 (0.919); GDI1 (0.906); VPS52 (0.839); USO1 (0.828); SEC31 (0.828); YPT32 (0.794); SEC13 (0.782)
Homologues (species, bitscore): TRAPPC6B (Homo sapiens, 87.4); Trappc6b (Mus musculus, 84.0); trappc6b (Danio rerio, 86.7); trappc6b (Xenopus tropicalis, 86.7); Trs33 (Drosophila melanogaster, 71.6); trpp-6 (Caenorhabditis elegans, 77.4); AT3G05000 (Arabidopsis thaliana, 92.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:522723-523529:- | gene-YOR115C_AKU4011 | rna-NM_001183534.3_AKU4011 | cds-NP_014758.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000171.1:55738-56544:+ | gene-YOR115C_BG1 | rna-NM_001183534.3_BG1 | cds-NP_014758.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:526271-527077:- | gene-YOR115C_Bruggeman | rna-NM_001183534.3_Bruggeman | cds-NP_014758.3_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:526276-527082:- | gene-YOR115C_CAT1 | rna-NM_001183534.3_CAT1 | cds-NP_014758.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:518286-519092:- | gene-YOR115C_CBS1585 | rna-NM_001183534.3_CBS1585 | cds-NP_014758.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:522996-523802:- | gene-YOR115C_CBS436 | rna-NM_001183534.3_CBS436 | cds-NP_014758.3_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:516771-517577:- | gene-YOR115C_CBS6412 | rna-NM_001183534.3_CBS6412 | cds-NP_014758.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:524068-524874:- | gene-YOR115C_CBS6413 | rna-NM_001183534.3_CBS6413 | cds-NP_014758.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:538739-539545:- | gene-YOR115C_CENPK1137D | rna-NM_001183534.3_CENPK1137D | cds-NP_014758.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:519092-519898:- | gene-YOR115C_EthanolRed | rna-NM_001183534.3_EthanolRed | cds-NP_014758.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:522787-523593:- | gene-YOR115C_FaliES1 | rna-NM_001183534.3_FaliES1 | cds-NP_014758.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000063.1:35671-36477:+ | gene-YOR115C_JAY291 | rna-NM_001183534.3_JAY291 | cds-NP_014758.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:530829-531635:- | gene-YOR115C_MUCL30387 | rna-NM_001183534.3_MUCL30387 | cds-NP_014758.3_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:536037-536843:- | gene-YOR115C_MUCL30388 | rna-NM_001183534.3_MUCL30388 | cds-NP_014758.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:525680-526486:- | gene-YOR115C_MUCL39482 | rna-NM_001183534.3_MUCL39482 | cds-NP_014758.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:541727-542533:- | gene-YOR115C_MUCL42920 | rna-NM_001183534.3_MUCL42920 | cds-NP_014758.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:538548-539354:- | gene-YOR115C_NCIM3186 | rna-NM_001183534.3_NCIM3186 | cds-NP_014758.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:532128-532934:- | gene-YOR115C_NCYC1407 | rna-NM_001183534.3_NCYC1407 | cds-NP_014758.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:531133-531939:- | gene-YOR115C_PE2H3 | rna-NM_001183534.3_PE2H3 | cds-NP_014758.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:541510-542316:- | gene-YOR115C_PE2H4 | rna-NM_001183534.3_PE2H4 | cds-NP_014758.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:538659-539465:- | gene-YOR115C_S288C | rna-NM_001183534.3_S288C | cds-NP_014758.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000034.1:68201-69007:- | gene-YOR115C_SA1 | rna-NM_001183534.3_SA1 | cds-NP_014758.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:521971-522777:- | gene-YOR115C_ThermosaccDry | rna-NM_001183534.3_ThermosaccDry | cds-NP_014758.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:524078-524884:- | gene-YOR115C_VR1 | rna-NM_001183534.3_VR1 | cds-NP_014758.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:255911-256717:- | gene-YOR115C_ZTW1 | rna-NM_001183534.3_ZTW1 | cds-NP_014758.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:527949-528755:- | gene-YOR115C_Sparadoxus | rna-NM_001183534.3_Sparadoxus | cds-NP_014758.3_Sparadoxus | 91.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |