Gene name: TRS23
Reference locus (S288C): YDR246W
Gene biotype: protein_coding
Description: Core component of transport protein particle (TRAPP) complexes I-III; TRAPP complexes are related multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII); human homolog is TRAPPC4
Top 10 interactors (score): TRS31 (0.999); BET5 (0.999); BET3 (0.999); TRS85 (0.999); TRS33 (0.999); TRS130 (0.999); YPT1 (0.999); TRS20 (0.999); TRS120 (0.999); TRS65 (0.995); TCA17 (0.993); MRS6 (0.944); SEC23 (0.94); GDI1 (0.907); YPT31 (0.88); YPT32 (0.846); VPS53 (0.832); SEC31 (0.785); COG8 (0.761); SFB3 (0.731)
Homologues (species, bitscore): TRAPPC4 (Homo sapiens, 80.1); Trappc4 (Mus musculus, 79.0); trappc4 (Danio rerio, 79.0); trappc4 (Xenopus tropicalis, 80.9); Trs23 (Drosophila melanogaster, 77.0); F36D4.2 (Caenorhabditis elegans, 71.6); AT5G02280 (Arabidopsis thaliana, 65.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:910618-911277:+ | gene-YDR246W_AKU4011 | rna-NM_001180554.3_AKU4011 | cds-NP_010532.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:213998-214657:- | gene-YDR246W_BG1 | rna-NM_001180554.3_BG1 | cds-NP_010532.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:942944-943603:+ | gene-YDR246W_Bruggeman | rna-NM_001180554.3_Bruggeman | cds-NP_010532.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:930230-930889:+ | gene-YDR246W_CAT1 | rna-NM_001180554.3_CAT1 | cds-NP_010532.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:900967-901626:+ | gene-YDR246W_CBS1585 | rna-NM_001180554.3_CBS1585 | cds-NP_010532.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:930525-931184:+ | gene-YDR246W_CBS436 | rna-NM_001180554.3_CBS436 | cds-NP_010532.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:897727-898386:+ | gene-YDR246W_CBS6412 | rna-NM_001180554.3_CBS6412 | cds-NP_010532.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:928821-929480:+ | gene-YDR246W_CBS6413 | rna-NM_001180554.3_CBS6413 | cds-NP_010532.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:953217-953876:+ | gene-YDR246W_CENPK1137D | rna-NM_001180554.3_CENPK1137D | cds-NP_010532.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:911350-912009:+ | gene-YDR246W_EthanolRed | rna-NM_001180554.3_EthanolRed | cds-NP_010532.3_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:919552-920211:+ | gene-YDR246W_FaliES1 | rna-NM_001180554.3_FaliES1 | cds-NP_010532.3_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000261.1:8022-8681:+ | gene-YDR246W_JAY291 | rna-NM_001180554.3_JAY291 | cds-NP_010532.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:928842-929501:+ | gene-YDR246W_MUCL30387 | rna-NM_001180554.3_MUCL30387 | cds-NP_010532.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:916872-917531:+ | gene-YDR246W_MUCL30388 | rna-NM_001180554.3_MUCL30388 | cds-NP_010532.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:902372-903031:+ | gene-YDR246W_MUCL39482 | rna-NM_001180554.3_MUCL39482 | cds-NP_010532.3_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:842138-842797:+ | gene-YDR246W_MUCL42920 | rna-NM_001180554.3_MUCL42920 | cds-NP_010532.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:954211-954870:+ | gene-YDR246W_NCIM3186 | rna-NM_001180554.3_NCIM3186 | cds-NP_010532.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:906040-906699:+ | gene-YDR246W_NCYC1407 | rna-NM_001180554.3_NCYC1407 | cds-NP_010532.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:922298-922957:+ | gene-YDR246W_PE2H3 | rna-NM_001180554.3_PE2H3 | cds-NP_010532.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:927575-928234:+ | gene-YDR246W_PE2H4 | rna-NM_001180554.3_PE2H4 | cds-NP_010532.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:954288-954947:+ | gene-YDR246W_S288C | rna-NM_001180554.3_S288C | cds-NP_010532.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:160135-160794:+ | gene-YDR246W_SA1 | rna-NM_001180554.3_SA1 | cds-NP_010532.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:917706-918365:+ | gene-YDR246W_ThermosaccDry | rna-NM_001180554.3_ThermosaccDry | cds-NP_010532.3_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:932897-933556:+ | gene-YDR246W_VR1 | rna-NM_001180554.3_VR1 | cds-NP_010532.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:180388-181047:+ | gene-YDR246W_ZTW1 | rna-NM_001180554.3_ZTW1 | cds-NP_010532.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:923063-923725:+ | gene-YDR246W_Sparadoxus | rna-NM_001180554.3_Sparadoxus | cds-NP_010532.3_Sparadoxus | 90.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |