Gene name: TRS20
Reference locus (S288C): YBR254C
Gene biotype: protein_coding
Description: Core component of transport protein particle (TRAPP) complexes I-III; TRAPPs are multimeric guanine nucleotide-exchange factors for GTPase Ypt1p, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII); mutation leads to defects in endocytic recycling, block in sporulation/meiosis; mutations in human homolog TRAPPC2 cause spondyloepiphyseal dysplasia tarda, TRAPPC2 can complement yeast null mutant
Top 10 interactors (score): TRS23 (0.999); TRS31 (0.999); TRS33 (0.999); TRS85 (0.999); BET3 (0.999); BET5 (0.999); TRS130 (0.999); TRS120 (0.999); TRS65 (0.998); TCA17 (0.994); YPT1 (0.99); MRS6 (0.939); SEC23 (0.936); YKT6 (0.916); GDI1 (0.911); SEC22 (0.904); YPT31 (0.897); YPT32 (0.849); SEC13 (0.841); SEC31 (0.835)
Homologues (species, bitscore): TRAPPC2 (Homo sapiens, 102.1); Trappc2 (Mus musculus, 100.1); trappc2 (Danio rerio, 100.5); trappc2 (Xenopus tropicalis, 99.4); Trs20 (Drosophila melanogaster, 97.4); sedl-1 (Caenorhabditis elegans, 97.1); AT1G80500 (Arabidopsis thaliana, 99.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:708021-708548:- | gene-YBR254C_AKU4011 | rna-NM_001178602.1_AKU4011 | cds-NP_009813.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:79042-79569:- | gene-YBR254C_BG1 | rna-NM_001178602.1_BG1 | cds-NP_009813.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:709183-709710:- | gene-YBR254C_Bruggeman | rna-NM_001178602.1_Bruggeman | cds-NP_009813.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:712937-713464:- | gene-YBR254C_CAT1 | rna-NM_001178602.1_CAT1 | cds-NP_009813.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:699587-700114:- | gene-YBR254C_CBS1585 | rna-NM_001178602.1_CBS1585 | cds-NP_009813.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:706032-706559:- | gene-YBR254C_CBS436 | rna-NM_001178602.1_CBS436 | cds-NP_009813.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:794202-794729:- | gene-YBR254C_CBS6412 | rna-NM_001178602.1_CBS6412 | cds-NP_009813.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:705635-706162:- | gene-YBR254C_CBS6413 | rna-NM_001178602.1_CBS6413 | cds-NP_009813.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:717644-718171:- | gene-YBR254C_CENPK1137D | rna-NM_001178602.1_CENPK1137D | cds-NP_009813.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:831058-831585:- | gene-YBR254C_EthanolRed | rna-NM_001178602.1_EthanolRed | cds-NP_009813.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:724405-724932:- | gene-YBR254C_FaliES1 | rna-NM_001178602.1_FaliES1 | cds-NP_009813.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:79123-79650:+ | gene-YBR254C_JAY291 | rna-NM_001178602.1_JAY291 | cds-NP_009813.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:711226-711753:- | gene-YBR254C_MUCL30387 | rna-NM_001178602.1_MUCL30387 | cds-NP_009813.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:728309-728836:- | gene-YBR254C_MUCL30388 | rna-NM_001178602.1_MUCL30388 | cds-NP_009813.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:697894-698421:- | gene-YBR254C_MUCL39482 | rna-NM_001178602.1_MUCL39482 | cds-NP_009813.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:707762-708289:- | gene-YBR254C_MUCL42920 | rna-NM_001178602.1_MUCL42920 | cds-NP_009813.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:723533-724060:- | gene-YBR254C_NCIM3186 | rna-NM_001178602.1_NCIM3186 | cds-NP_009813.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:699783-700310:- | gene-YBR254C_NCYC1407 | rna-NM_001178602.1_NCYC1407 | cds-NP_009813.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:722915-723442:- | gene-YBR254C_PE2H3 | rna-NM_001178602.1_PE2H3 | cds-NP_009813.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:720591-721118:- | gene-YBR254C_PE2H4 | rna-NM_001178602.1_PE2H4 | cds-NP_009813.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:723736-724263:- | gene-YBR254C_S288C | rna-NM_001178602.1_S288C | cds-NP_009813.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:78863-79390:- | gene-YBR254C_SA1 | rna-NM_001178602.1_SA1 | cds-NP_009813.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:723397-723924:- | gene-YBR254C_ThermosaccDry | rna-NM_001178602.1_ThermosaccDry | cds-NP_009813.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:703610-704137:- | gene-YBR254C_VR1 | rna-NM_001178602.1_VR1 | cds-NP_009813.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:696243-696770:- | gene-YBR254C_ZTW1 | rna-NM_001178602.1_ZTW1 | cds-NP_009813.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:740160-740687:- | gene-YBR254C_Sparadoxus | rna-NM_001178602.1_Sparadoxus | cds-NP_009813.1_Sparadoxus | 89.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |