Gene name: TRS130
Reference locus (S288C): YMR218C
Gene biotype: protein_coding
Description: Trafficking protein particle complex II-specific subunit 130; Component of transport protein particle (TRAPP) complex II; TRAPPII is a multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating intra-Golgi and endosome-Golgi traffic
Top 10 interactors (score): TRS31 (0.999); TRS120 (0.999); TRS20 (0.999); TRS33 (0.999); TRS85 (0.999); BET3 (0.999); BET5 (0.999); TRS23 (0.999); TRS65 (0.998); TCA17 (0.997); YPT31 (0.989); YPT1 (0.989); YPT32 (0.941); SEC23 (0.925); MRS6 (0.907); GDI1 (0.906); USO1 (0.891); SEC31 (0.887); DDL1 (0.839); SEC13 (0.834)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:743485-746793:- | gene-YMR218C_AKU4011 | rna-NM_001182725.1_AKU4011 | cds-NP_013945.1_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:207815-211123:+ | gene-YMR218C_BG1 | rna-NM_001182725.1_BG1 | cds-NP_013945.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:687714-691022:- | gene-YMR218C_Bruggeman | rna-NM_001182725.1_Bruggeman | cds-NP_013945.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:690969-694277:- | gene-YMR218C_CAT1 | rna-NM_001182725.1_CAT1 | cds-NP_013945.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:675746-679054:- | gene-YMR218C_CBS1585 | rna-NM_001182725.1_CBS1585 | cds-NP_013945.1_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:680015-683323:- | gene-YMR218C_CBS436 | rna-NM_001182725.1_CBS436 | cds-NP_013945.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:787307-790615:- | gene-YMR218C_CBS6412 | rna-NM_001182725.1_CBS6412 | cds-NP_013945.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:674898-678206:- | gene-YMR218C_CBS6413 | rna-NM_001182725.1_CBS6413 | cds-NP_013945.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:698284-701592:- | gene-YMR218C_CENPK1137D | rna-NM_001182725.1_CENPK1137D | cds-NP_013945.1_CENPK1137D | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:735952-739260:- | gene-YMR218C_EthanolRed | rna-NM_001182725.1_EthanolRed | cds-NP_013945.1_EthanolRed | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:681604-684912:- | gene-YMR218C_FaliES1 | rna-NM_001182725.1_FaliES1 | cds-NP_013945.1_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:101124-104432:+ | gene-YMR218C_JAY291 | rna-NM_001182725.1_JAY291 | cds-NP_013945.1_JAY291 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:681248-684556:- | gene-YMR218C_MUCL30387 | rna-NM_001182725.1_MUCL30387 | cds-NP_013945.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:688040-691348:- | gene-YMR218C_MUCL30388 | rna-NM_001182725.1_MUCL30388 | cds-NP_013945.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:676816-680124:- | gene-YMR218C_MUCL39482 | rna-NM_001182725.1_MUCL39482 | cds-NP_013945.1_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:684160-687468:- | gene-YMR218C_MUCL42920 | rna-NM_001182725.1_MUCL42920 | cds-NP_013945.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:703533-706841:- | gene-YMR218C_NCIM3186 | rna-NM_001182725.1_NCIM3186 | cds-NP_013945.1_NCIM3186 | 96.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:676472-679780:- | gene-YMR218C_NCYC1407 | rna-NM_001182725.1_NCYC1407 | cds-NP_013945.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:686335-689643:- | gene-YMR218C_PE2H3 | rna-NM_001182725.1_PE2H3 | cds-NP_013945.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:687350-690658:- | gene-YMR218C_PE2H4 | rna-NM_001182725.1_PE2H4 | cds-NP_013945.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:703579-706887:- | gene-YMR218C_S288C | rna-NM_001182725.1_S288C | cds-NP_013945.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:101238-104546:+ | gene-YMR218C_SA1 | rna-NM_001182725.1_SA1 | cds-NP_013945.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:677775-681083:- | gene-YMR218C_ThermosaccDry | rna-NM_001182725.1_ThermosaccDry | cds-NP_013945.1_ThermosaccDry | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:690858-694166:- | gene-YMR218C_VR1 | rna-NM_001182725.1_VR1 | cds-NP_013945.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:93481-96789:- | gene-YMR218C_ZTW1 | rna-NM_001182725.1_ZTW1 | cds-NP_013945.1_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:695611-698919:- | gene-YMR218C_Sparadoxus | rna-NM_001182725.1_Sparadoxus | cds-NP_013945.1_Sparadoxus | 89.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |