Gene name: TRS120
Reference locus (S288C): YDR407C
Gene biotype: protein_coding
Description: Trafficking protein particle complex II-specific subunit 120; Component of transport protein particle (TRAPP) complex II; TRAPPII is a multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating intra-Golgi and endosome-Golgi traffic; Belongs to the TRS120 family
Top 10 interactors (score): BET5 (0.999); BET3 (0.999); TRS31 (0.999); TRS23 (0.999); TRS130 (0.999); TRS33 (0.999); TRS85 (0.999); TRS65 (0.999); TRS20 (0.999); TCA17 (0.997); YPT1 (0.991); YPT31 (0.981); YPT32 (0.943); MRS6 (0.913); SEC23 (0.912); GDI1 (0.912); SEC31 (0.91); LRG1 (0.908); YPT11 (0.854); SEC24 (0.834)
Homologues (species, bitscore): TRAPPC9 (Homo sapiens, 62.0); Trappc9 (Mus musculus, 63.9); si:dkey-218f9.10 (Danio rerio, 65.9); bru (Drosophila melanogaster, 55.5); TRS120 (Arabidopsis thaliana, 53.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1224221-1228090:- | gene-YDR407C_AKU4011 | rna-NM_001180715.1_AKU4011 | cds-NP_010695.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:102705-106574:- | gene-YDR407C_BG1 | rna-NM_001180715.1_BG1 | cds-NP_010695.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1255100-1258969:- | gene-YDR407C_Bruggeman | rna-NM_001180715.1_Bruggeman | cds-NP_010695.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1233663-1237532:- | gene-YDR407C_CAT1 | rna-NM_001180715.1_CAT1 | cds-NP_010695.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1219141-1223010:- | gene-YDR407C_CBS1585 | rna-NM_001180715.1_CBS1585 | cds-NP_010695.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1238001-1241870:- | gene-YDR407C_CBS436 | rna-NM_001180715.1_CBS436 | cds-NP_010695.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1215195-1219064:- | gene-YDR407C_CBS6412 | rna-NM_001180715.1_CBS6412 | cds-NP_010695.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1237050-1240919:- | gene-YDR407C_CBS6413 | rna-NM_001180715.1_CBS6413 | cds-NP_010695.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1282728-1286597:- | gene-YDR407C_CENPK1137D | rna-NM_001180715.1_CENPK1137D | cds-NP_010695.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1228623-1232492:- | gene-YDR407C_EthanolRed | rna-NM_001180715.1_EthanolRed | cds-NP_010695.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1231933-1235802:- | gene-YDR407C_FaliES1 | rna-NM_001180715.1_FaliES1 | cds-NP_010695.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000181.1:19727-23596:+ | gene-YDR407C_JAY291 | rna-NM_001180715.1_JAY291 | cds-NP_010695.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1238662-1242531:- | gene-YDR407C_MUCL30387 | rna-NM_001180715.1_MUCL30387 | cds-NP_010695.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1220768-1224637:- | gene-YDR407C_MUCL30388 | rna-NM_001180715.1_MUCL30388 | cds-NP_010695.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1210469-1214338:- | gene-YDR407C_MUCL39482 | rna-NM_001180715.1_MUCL39482 | cds-NP_010695.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1152901-1156770:- | gene-YDR407C_MUCL42920 | rna-NM_001180715.1_MUCL42920 | cds-NP_010695.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1283992-1287861:- | gene-YDR407C_NCIM3186 | rna-NM_001180715.1_NCIM3186 | cds-NP_010695.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1224441-1228310:- | gene-YDR407C_NCYC1407 | rna-NM_001180715.1_NCYC1407 | cds-NP_010695.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1234574-1238443:- | gene-YDR407C_PE2H3 | rna-NM_001180715.1_PE2H3 | cds-NP_010695.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1240142-1244011:- | gene-YDR407C_PE2H4 | rna-NM_001180715.1_PE2H4 | cds-NP_010695.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1284069-1287938:- | gene-YDR407C_S288C | rna-NM_001180715.1_S288C | cds-NP_010695.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000071.1:19849-23718:+ | gene-YDR407C_SA1 | rna-NM_001180715.1_SA1 | cds-NP_010695.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1236195-1240064:- | gene-YDR407C_ThermosaccDry | rna-NM_001180715.1_ThermosaccDry | cds-NP_010695.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1251381-1255250:- | gene-YDR407C_VR1 | rna-NM_001180715.1_VR1 | cds-NP_010695.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:278990-282859:- | gene-YDR407C_ZTW1 | rna-NM_001180715.1_ZTW1 | cds-NP_010695.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1231434-1235303:- | gene-YDR407C_Sparadoxus | rna-NM_001180715.1_Sparadoxus | cds-NP_010695.1_Sparadoxus | 88.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |