Gene name: TRP5
Reference locus (S288C): YGL026C
Gene biotype: protein_coding
Description: Tryptophan synthase; catalyzes the last step of tryptophan biosynthesis; regulated by the general control system of amino acid biosynthesis; In the N-terminal section; belongs to the TrpA family
Top 10 interactors (score): TRP4 (0.999); TRP3 (0.999); TRP1 (0.999); TRP2 (0.998); THR4 (0.99); ABZ1 (0.987); ARO2 (0.985); HOM3 (0.984); LYS2 (0.983); ILV1 (0.982); HIS4 (0.977); HIS3 (0.977); SHM1 (0.975); SHM2 (0.975); HIS7 (0.974); CYS4 (0.968); CHA1 (0.965); PRO2 (0.962); ARO1 (0.961); HIS1 (0.961)
Homologues (species, bitscore): TSB1 (Arabidopsis thaliana, 466.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:448476-450599:- | gene-YGL026C_AKU4011 | rna-NM_001180891.1_AKU4011 | cds-NP_011489.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:125543-127666:+ | gene-YGL026C_BG1 | rna-NM_001180891.1_BG1 | cds-NP_011489.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:449450-451573:- | gene-YGL026C_Bruggeman | rna-NM_001180891.1_Bruggeman | cds-NP_011489.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:447472-449595:- | gene-YGL026C_CAT1 | rna-NM_001180891.1_CAT1 | cds-NP_011489.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:449947-452070:- | gene-YGL026C_CBS1585 | rna-NM_001180891.1_CBS1585 | cds-NP_011489.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:444296-446419:- | gene-YGL026C_CBS436 | rna-NM_001180891.1_CBS436 | cds-NP_011489.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:442562-444685:- | gene-YGL026C_CBS6412 | rna-NM_001180891.1_CBS6412 | cds-NP_011489.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:446619-448742:- | gene-YGL026C_CBS6413 | rna-NM_001180891.1_CBS6413 | cds-NP_011489.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:446249-448372:- | gene-YGL026C_CENPK1137D | rna-NM_001180891.1_CENPK1137D | cds-NP_011489.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:436843-438966:- | gene-YGL026C_EthanolRed | rna-NM_001180891.1_EthanolRed | cds-NP_011489.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:440081-442204:- | gene-YGL026C_FaliES1 | rna-NM_001180891.1_FaliES1 | cds-NP_011489.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000177.1:8800-10923:- | gene-YGL026C_JAY291 | rna-NM_001180891.1_JAY291 | cds-NP_011489.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:446655-448778:- | gene-YGL026C_MUCL30387 | rna-NM_001180891.1_MUCL30387 | cds-NP_011489.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:449204-451327:- | gene-YGL026C_MUCL30388 | rna-NM_001180891.1_MUCL30388 | cds-NP_011489.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:445786-447909:- | gene-YGL026C_MUCL39482 | rna-NM_001180891.1_MUCL39482 | cds-NP_011489.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:455232-457355:- | gene-YGL026C_MUCL42920 | rna-NM_001180891.1_MUCL42920 | cds-NP_011489.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:446412-448535:- | gene-YGL026C_NCIM3186 | rna-NM_001180891.1_NCIM3186 | cds-NP_011489.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:439808-441931:- | gene-YGL026C_NCYC1407 | rna-NM_001180891.1_NCYC1407 | cds-NP_011489.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:442465-444588:- | gene-YGL026C_PE2H3 | rna-NM_001180891.1_PE2H3 | cds-NP_011489.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:447515-449638:- | gene-YGL026C_PE2H4 | rna-NM_001180891.1_PE2H4 | cds-NP_011489.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:446412-448535:- | gene-YGL026C_S288C | rna-NM_001180891.1_S288C | cds-NP_011489.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:107061-109184:+ | gene-YGL026C_SA1 | rna-NM_001180891.1_SA1 | cds-NP_011489.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:459406-461529:- | gene-YGL026C_ThermosaccDry | rna-NM_001180891.1_ThermosaccDry | cds-NP_011489.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:549485-551608:- | gene-YGL026C_VR1 | rna-NM_001180891.1_VR1 | cds-NP_011489.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:438031-440154:- | gene-YGL026C_ZTW1 | rna-NM_001180891.1_ZTW1 | cds-NP_011489.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:447645-449768:- | gene-YGL026C_Sparadoxus | rna-NM_001180891.1_Sparadoxus | cds-NP_011489.1_Sparadoxus | 92.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |