Gene name: TRP1
Reference locus (S288C): YDR007W
Gene biotype: protein_coding
Description: Phosphoribosylanthranilate isomerase; catalyzes the third step in tryptophan biosynthesis; in 2004, the sequence of TRP1 from strain S228C was updated by changing the previously annotated internal STOP (TAA) to serine (TCA); enhances vegetative growth at low and high temperatures when used as an auxotrophic marker in strains such as W303
Top 10 interactors (score): TRP3 (0.999); TRP5 (0.999); TRP4 (0.998); HIS3 (0.981); LEU2 (0.978); URA3 (0.97); ADE2 (0.969); HIS4 (0.969); LYS2 (0.964); GAL1 (0.957); HIS7 (0.956); CAN1 (0.947); ADE1 (0.909); ADE6 (0.89); HIS5 (0.861); TRP2 (0.861); SUP35 (0.856); VHC1 (0.841); TAT2 (0.835); PEP4 (0.813)
Homologues (species, bitscore): PAI1 (Arabidopsis thaliana, 89.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:447093-447767:+ | gene-YDR007W_AKU4011 | rna-NM_001180315.3_AKU4011 | cds-NP_010290.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:101384-102058:- | gene-YDR007W_BG1 | rna-NM_001180315.3_BG1 | cds-NP_010290.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:467699-468373:+ | gene-YDR007W_Bruggeman | rna-NM_001180315.3_Bruggeman | cds-NP_010290.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:460544-461218:+ | gene-YDR007W_CAT1 | rna-NM_001180315.3_CAT1 | cds-NP_010290.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:444305-444979:+ | gene-YDR007W_CBS1585 | rna-NM_001180315.3_CBS1585 | cds-NP_010290.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:461074-461748:+ | gene-YDR007W_CBS436 | rna-NM_001180315.3_CBS436 | cds-NP_010290.3_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:441552-442226:+ | gene-YDR007W_CBS6412 | rna-NM_001180315.3_CBS6412 | cds-NP_010290.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:463243-463917:+ | gene-YDR007W_CBS6413 | rna-NM_001180315.3_CBS6413 | cds-NP_010290.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:460705-461379:+ | gene-YDR007W_CENPK1137D | rna-NM_001180315.3_CENPK1137D | cds-NP_010290.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:455924-456598:+ | gene-YDR007W_EthanolRed | rna-NM_001180315.3_EthanolRed | cds-NP_010290.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:462095-462769:+ | gene-YDR007W_FaliES1 | rna-NM_001180315.3_FaliES1 | cds-NP_010290.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000442.1:9290-9964:- | gene-YDR007W_JAY291 | rna-NM_001180315.3_JAY291 | cds-NP_010290.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:461572-462246:+ | gene-YDR007W_MUCL30387 | rna-NM_001180315.3_MUCL30387 | cds-NP_010290.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:452032-452706:+ | gene-YDR007W_MUCL30388 | rna-NM_001180315.3_MUCL30388 | cds-NP_010290.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:445674-446348:+ | gene-YDR007W_MUCL39482 | rna-NM_001180315.3_MUCL39482 | cds-NP_010290.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:367105-367778:+ | gene-YDR007W_MUCL42920 | rna-NM_001180315.3_MUCL42920 | cds-NP_010290.3_MUCL42920 | 99.5 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:461765-462439:+ | gene-YDR007W_NCIM3186 | rna-NM_001180315.3_NCIM3186 | cds-NP_010290.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:444596-445270:+ | gene-YDR007W_NCYC1407 | rna-NM_001180315.3_NCYC1407 | cds-NP_010290.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:460211-460885:+ | gene-YDR007W_PE2H3 | rna-NM_001180315.3_PE2H3 | cds-NP_010290.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:459516-460190:+ | gene-YDR007W_PE2H4 | rna-NM_001180315.3_PE2H4 | cds-NP_010290.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:461842-462516:+ | gene-YDR007W_S288C | rna-NM_001180315.3_S288C | cds-NP_010290.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000099.1:9451-10125:- | gene-YDR007W_SA1 | rna-NM_001180315.3_SA1 | cds-NP_010290.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:461574-462248:+ | gene-YDR007W_ThermosaccDry | rna-NM_001180315.3_ThermosaccDry | cds-NP_010290.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:466014-466688:+ | gene-YDR007W_VR1 | rna-NM_001180315.3_VR1 | cds-NP_010290.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:459470-460144:+ | gene-YDR007W_ZTW1 | rna-NM_001180315.3_ZTW1 | cds-NP_010290.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:463825-464499:+ | gene-YDR007W_Sparadoxus | rna-NM_001180315.3_Sparadoxus | cds-NP_010290.3_Sparadoxus | 88.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |