TRN1 (YNCA0002W)

Gene profile

Gene name: TRN1
Reference locus (S288C): YNCA0002W
Gene biotype: tRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005295.1:124264-124366:+ gene-YNCA0002W_AKU4011 rna-YNCA0002W_AKU4011 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000070.1:111215-111317:+ gene-YNCA0002W_BG1 rna-YNCA0002W_BG1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005503.1:139137-139239:+ gene-YNCA0002W_Bruggeman rna-YNCA0002W_Bruggeman Unknown 100.0 100.0 Unannotated 6 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005508.1:96923-97025:+ gene-YNCA0002W_2_Bruggeman Unknown Unknown 100.0 100.0 Unannotated 6 3 0 Unknown Unknown non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005516.1:551659-551761:+ gene-YNCA0002W_3_Bruggeman Unknown Unknown 100.0 100.0 Unannotated 6 4 0 Unknown Unknown non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000050.1:370-472:- gene-YNCA0002W_4_Bruggeman Unknown Unknown 100.0 100.0 Unannotated 6 5 0 Unknown Unknown non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000228.1:305-407:+ gene-YNCA0002W_1_Bruggeman Unknown Unknown 100.0 100.0 Unannotated 6 2 0 Unknown Unknown non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000264.1:99-201:- gene-YNCA0002W_5_Bruggeman Unknown Unknown 100.0 100.0 Unannotated 6 6 0 Unknown Unknown non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005519.1:125475-125577:+ gene-YNCA0002W_CAT1 rna-YNCA0002W_CAT1 Unknown 100.0 100.0 Unannotated 3 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005524.1:102761-102863:+ gene-YNCA0002W_1_CAT1 Unknown Unknown 100.0 100.0 Unannotated 3 2 0 Unknown Unknown non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000237.1:363-464:- gene-YNCA0002W_2_CAT1 Unknown Unknown 100.0 100.0 Unannotated 3 3 0 Unknown Unknown non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005359.1:137276-137378:+ gene-YNCA0002W_CBS1585 rna-YNCA0002W_CBS1585 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005343.1:137555-137657:+ gene-YNCA0002W_CBS436 rna-YNCA0002W_CBS436 Unknown 100.0 100.0 Unannotated 2 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia MBVR01000063.1:43-145:- gene-YNCA0002W_1_CBS436 Unknown Unknown 100.0 100.0 Unannotated 2 2 0 Unknown Unknown non_coding non_coding non_coding
CBS6412 GCA_001738345.1 Sake Asia CM005338.1:750376-750478:+ gene-YNCA0002W_CBS6412 rna-YNCA0002W_CBS6412 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005311.1:135546-135648:+ gene-YNCA0002W_CBS6413 rna-YNCA0002W_CBS6413 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001522.1:139312-139414:+ gene-YNCA0002W_CENPK1137D rna-YNCA0002W_CENPK1137D Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005471.1:125683-125785:+ gene-YNCA0002W_EthanolRed rna-YNCA0002W_EthanolRed Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005535.1:140793-140895:+ gene-YNCA0002W_FaliES1 rna-YNCA0002W_FaliES1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000084.1:111581-111683:+ gene-YNCA0002W_JAY291 rna-YNCA0002W_JAY291 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005407.1:140290-140392:+ gene-YNCA0002W_MUCL30387 rna-YNCA0002W_MUCL30387 Unknown 100.0 100.0 Unannotated 4 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005414.1:383809-383911:- gene-YNCA0002W_2_MUCL30387 Unknown Unknown 100.0 100.0 Unannotated 4 3 0 Unknown Unknown non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000187.1:99-201:- gene-YNCA0002W_1_MUCL30387 Unknown Unknown 100.0 100.0 Unannotated 4 2 0 Unknown Unknown non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000322.1:521-623:+ gene-YNCA0002W_3_MUCL30387 Unknown Unknown 100.0 100.0 Unannotated 4 4 0 Unknown Unknown non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005439.1:137538-137640:+ gene-YNCA0002W_MUCL30388 rna-YNCA0002W_MUCL30388 Unknown 100.0 100.0 Unannotated 3 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000076.1:273-375:- gene-YNCA0002W_1_MUCL30388 Unknown Unknown 100.0 100.0 Unannotated 3 2 0 Unknown Unknown non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000177.1:411-513:+ gene-YNCA0002W_2_MUCL30388 Unknown Unknown 100.0 100.0 Unannotated 3 3 0 Unknown Unknown non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005279.1:136550-136652:+ gene-YNCA0002W_MUCL39482 rna-YNCA0002W_MUCL39482 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005423.1:138440-138542:+ gene-YNCA0002W_MUCL42920 rna-YNCA0002W_MUCL42920 Unknown 100.0 100.0 Unannotated 3 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000088.1:294-396:+ gene-YNCA0002W_2_MUCL42920 Unknown Unknown 100.0 100.0 Unannotated 3 3 0 Unknown Unknown non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000204.1:122-224:- gene-YNCA0002W_1_MUCL42920 Unknown Unknown 100.0 100.0 Unannotated 3 2 0 Unknown Unknown non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011810.1:139029-139131:+ gene-YNCA0002W_NCIM3186 rna-YNCA0002W_NCIM3186 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005263.1:123941-124043:+ gene-YNCA0002W_NCYC1407 rna-YNCA0002W_NCYC1407 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994140.1:125870-125972:+ gene-YNCA0002W_PE2H3 rna-YNCA0002W_PE2H3 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999872.1:125589-125691:+ gene-YNCA0002W_PE2H4 rna-YNCA0002W_PE2H4 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001133.9:139152-139254:+ gene-YNCA0002W_S288C rna-YNCA0002W_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000077.1:56074-56176:+ gene-YNCA0002W_SA1 rna-YNCA0002W_SA1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005487.1:139802-139904:+ gene-YNCA0002W_ThermosaccDry rna-YNCA0002W_ThermosaccDry Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005455.1:141113-141215:+ gene-YNCA0002W_VR1 rna-YNCA0002W_VR1 Unknown 100.0 100.0 Unannotated 2 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000123.1:1006-1108:- gene-YNCA0002W_1_VR1 Unknown Unknown 100.0 100.0 Unannotated 2 2 0 Unknown Unknown non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000002.1:111630-111732:+ gene-YNCA0002W_ZTW1 rna-YNCA0002W_ZTW1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047487.1:129204-129306:+ gene-YNCA0002W_Sparadoxus rna-YNCA0002W_Sparadoxus Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files