Gene name: TRM9
Reference locus (S288C): YML014W
Gene biotype: protein_coding
Description: tRNA methyltransferase; catalyzes modification of wobble bases in tRNA anticodons to 2, 5-methoxycarbonylmethyluridine and 5-methoxycarbonylmethyl-2-thiouridine; may act as part of a complex with Trm112p; deletion mutation increases translational infidelity, including amino acid misincorporation and -1 frameshifting, and also confers resistance to zymocin; null mutant displays activation of stress responses
Top 10 interactors (score): TRM112 (0.999); TRM11 (0.989); MTQ2 (0.985); NCS6 (0.984); NCL1 (0.975); BUD23 (0.967); ELP3 (0.963); NCS2 (0.961); TRM7 (0.955); GCD14 (0.953); URM1 (0.952); TRM8 (0.95); TRM5 (0.948); MCM5 (0.947); ELP2 (0.945); TRM1 (0.943); UBA4 (0.942); TRM82 (0.929); TRM10 (0.929); GCD10 (0.925)
Homologues (species, bitscore): ALKBH8 (Homo sapiens, 176.4); Alkbh8 (Mus musculus, 181.0); zgc:73340 (Danio rerio, 158.7); alkbh8 (Xenopus tropicalis, 186.4); CG17807 (Drosophila melanogaster, 144.4); alkb-8 (Caenorhabditis elegans, 123.2); AT1G36310 (Arabidopsis thaliana, 161.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:292779-293618:+ | gene-YML014W_AKU4011 | rna-NM_001182372.1_AKU4011 | cds-NP_013698.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:249197-250036:- | gene-YML014W_BG1 | rna-NM_001182372.1_BG1 | cds-NP_013698.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:232759-233598:+ | gene-YML014W_Bruggeman | rna-NM_001182372.1_Bruggeman | cds-NP_013698.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:235269-236108:+ | gene-YML014W_CAT1 | rna-NM_001182372.1_CAT1 | cds-NP_013698.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:225757-226596:+ | gene-YML014W_CBS1585 | rna-NM_001182372.1_CBS1585 | cds-NP_013698.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:231284-232123:+ | gene-YML014W_CBS436 | rna-NM_001182372.1_CBS436 | cds-NP_013698.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:339490-340329:+ | gene-YML014W_CBS6412 | rna-NM_001182372.1_CBS6412 | cds-NP_013698.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:225012-225851:+ | gene-YML014W_CBS6413 | rna-NM_001182372.1_CBS6413 | cds-NP_013698.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:237956-238795:+ | gene-YML014W_CENPK1137D | rna-NM_001182372.1_CENPK1137D | cds-NP_013698.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:225791-226630:+ | gene-YML014W_EthanolRed | rna-NM_001182372.1_EthanolRed | cds-NP_013698.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:228757-229596:+ | gene-YML014W_FaliES1 | rna-NM_001182372.1_FaliES1 | cds-NP_013698.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:207332-208171:- | gene-YML014W_JAY291 | rna-NM_001182372.1_JAY291 | cds-NP_013698.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:230498-231337:+ | gene-YML014W_MUCL30387 | rna-NM_001182372.1_MUCL30387 | cds-NP_013698.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:235159-235998:+ | gene-YML014W_MUCL30388 | rna-NM_001182372.1_MUCL30388 | cds-NP_013698.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:226037-226876:+ | gene-YML014W_MUCL39482 | rna-NM_001182372.1_MUCL39482 | cds-NP_013698.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:231600-232439:+ | gene-YML014W_MUCL42920 | rna-NM_001182372.1_MUCL42920 | cds-NP_013698.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:243179-244018:+ | gene-YML014W_NCIM3186 | rna-NM_001182372.1_NCIM3186 | cds-NP_013698.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:225972-226811:+ | gene-YML014W_NCYC1407 | rna-NM_001182372.1_NCYC1407 | cds-NP_013698.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:231902-232741:+ | gene-YML014W_PE2H3 | rna-NM_001182372.1_PE2H3 | cds-NP_013698.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:237997-238836:+ | gene-YML014W_PE2H4 | rna-NM_001182372.1_PE2H4 | cds-NP_013698.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:243225-244064:+ | gene-YML014W_S288C | rna-NM_001182372.1_S288C | cds-NP_013698.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:294219-295058:- | gene-YML014W_SA1 | rna-NM_001182372.1_SA1 | cds-NP_013698.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:225819-226658:+ | gene-YML014W_ThermosaccDry | rna-NM_001182372.1_ThermosaccDry | cds-NP_013698.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:229791-230630:+ | gene-YML014W_VR1 | rna-NM_001182372.1_VR1 | cds-NP_013698.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:204878-205717:+ | gene-YML014W_ZTW1 | rna-NM_001182372.1_ZTW1 | cds-NP_013698.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:236547-237386:+ | gene-YML014W_Sparadoxus | rna-NM_001182372.1_Sparadoxus | cds-NP_013698.1_Sparadoxus | 89.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |