Gene name: TRM8
Reference locus (S288C): YDL201W
Gene biotype: protein_coding
Description: Noncatalytic subunit of a tRNA methyltransferase complex; Trm8p and Trm82p comprise an enzyme that catalyzes a methyl-transfer from S-adenosyl-l-methionine to the N(7) atom of guanine at position 46 in tRNA; Trm8 lacks catalytic activity if not bound to Trm82p
Top 10 interactors (score): GCD10 (0.999); TRM1 (0.999); NCL1 (0.999); TRM82 (0.999); GCD14 (0.999); TRM11 (0.998); MTQ2 (0.996); RAT1 (0.993); TRM10 (0.99); TRM112 (0.988); YTM1 (0.983); TRM7 (0.982); BUD23 (0.98); TRM5 (0.979); RPA43 (0.978); NOP7 (0.968); NOP2 (0.962); BRX1 (0.959); EBP2 (0.957); TRM9 (0.95)
Homologues (species, bitscore): METTL1 (Homo sapiens, 300.1); Mettl1 (Mus musculus, 300.4); mettl1 (Danio rerio, 293.5); mettl1 (Xenopus tropicalis, 297.0); CG4045 (Drosophila melanogaster, 293.1); W02B12.10 (Caenorhabditis elegans, 315.1); AT5G24840 (Arabidopsis thaliana, 280.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:83046-83906:+ | gene-YDL201W_AKU4011 | rna-NM_001180261.1_AKU4011 | cds-NP_010080.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:464764-465624:- | gene-YDL201W_BG1 | rna-NM_001180261.1_BG1 | cds-NP_010080.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:99422-100282:+ | gene-YDL201W_Bruggeman | rna-NM_001180261.1_Bruggeman | cds-NP_010080.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:101546-102406:+ | gene-YDL201W_CAT1 | rna-NM_001180261.1_CAT1 | cds-NP_010080.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:81897-82757:+ | gene-YDL201W_CBS1585 | rna-NM_001180261.1_CBS1585 | cds-NP_010080.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:296799-297659:+ | gene-YDL201W_CBS436 | rna-NM_001180261.1_CBS436 | cds-NP_010080.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:82011-82871:+ | gene-YDL201W_CBS6412 | rna-NM_001180261.1_CBS6412 | cds-NP_010080.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:99555-100415:+ | gene-YDL201W_CBS6413 | rna-NM_001180261.1_CBS6413 | cds-NP_010080.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:98227-99087:+ | gene-YDL201W_CENPK1137D | rna-NM_001180261.1_CENPK1137D | cds-NP_010080.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:95697-96557:+ | gene-YDL201W_EthanolRed | rna-NM_001180261.1_EthanolRed | cds-NP_010080.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:100303-101163:+ | gene-YDL201W_FaliES1 | rna-NM_001180261.1_FaliES1 | cds-NP_010080.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000344.1:18090-18950:- | gene-YDL201W_JAY291 | rna-NM_001180261.1_JAY291 | cds-NP_010080.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:97673-98533:+ | gene-YDL201W_MUCL30387 | rna-NM_001180261.1_MUCL30387 | cds-NP_010080.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:87240-88100:+ | gene-YDL201W_MUCL30388 | rna-NM_001180261.1_MUCL30388 | cds-NP_010080.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:82741-83601:+ | gene-YDL201W_MUCL39482 | rna-NM_001180261.1_MUCL39482 | cds-NP_010080.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:98809-99669:+ | gene-YDL201W_MUCL42920 | rna-NM_001180261.1_MUCL42920 | cds-NP_010080.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:99484-100344:+ | gene-YDL201W_NCIM3186 | rna-NM_001180261.1_NCIM3186 | cds-NP_010080.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:82698-83558:+ | gene-YDL201W_NCYC1407 | rna-NM_001180261.1_NCYC1407 | cds-NP_010080.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:90449-91309:+ | gene-YDL201W_PE2H3 | rna-NM_001180261.1_PE2H3 | cds-NP_010080.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:90459-91319:+ | gene-YDL201W_PE2H4 | rna-NM_001180261.1_PE2H4 | cds-NP_010080.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:99561-100421:+ | gene-YDL201W_S288C | rna-NM_001180261.1_S288C | cds-NP_010080.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000090.1:14052-14912:+ | gene-YDL201W_SA1 | rna-NM_001180261.1_SA1 | cds-NP_010080.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:100062-100922:+ | gene-YDL201W_ThermosaccDry | rna-NM_001180261.1_ThermosaccDry | cds-NP_010080.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:100999-101859:+ | gene-YDL201W_VR1 | rna-NM_001180261.1_VR1 | cds-NP_010080.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:98736-99596:+ | gene-YDL201W_ZTW1 | rna-NM_001180261.1_ZTW1 | cds-NP_010080.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:102107-102967:+ | gene-YDL201W_Sparadoxus | rna-NM_001180261.1_Sparadoxus | cds-NP_010080.1_Sparadoxus | 92.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |