Gene name: TRM44
Reference locus (S288C): YPL030W
Gene biotype: protein_coding
Description: Trnaser (uridine44-2'-o)-methyltransferase; tRNA(Ser) Um(44) 2'-O-methyltransferase; involved in maintaining levels of the tRNA-Ser species tS(CGA) and tS(UGA); conserved among metazoans and fungi but there does not appear to be a homolog in plants; TRM44 is a non-essential gene
Top 10 interactors (score): TRM7 (0.909); TRM13 (0.901); TRM3 (0.898); NCL1 (0.888); TRM8 (0.856); TRM732 (0.846); PUS4 (0.824); SPB1 (0.81); TRM12 (0.783); UTP18 (0.775); MRM1 (0.748); TAN1 (0.738); TRM11 (0.699); BUD17 (0.696); TRM1 (0.693); EMG1 (0.69); IPI3 (0.689); GPC1 (0.682); YGR026W (0.682); YFL040W (0.676)
Homologues (species, bitscore): TRMT44 (Homo sapiens, 129.0); Trmt44 (Mus musculus, 127.5); trmt44 (Danio rerio, 132.5); trmt44 (Xenopus tropicalis, 132.5); CG9386 (Drosophila melanogaster, 146.4); C23G10.7 (Caenorhabditis elegans, 106.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:465035-466738:+ | gene-YPL030W_AKU4011 | rna-NM_001183844.1_AKU4011 | cds-NP_015295.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:430642-432345:- | gene-YPL030W_BG1 | rna-NM_001183844.1_BG1 | cds-NP_015295.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:541995-543698:+ | gene-YPL030W_Bruggeman | rna-NM_001183844.1_Bruggeman | cds-NP_015295.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:581676-583379:+ | gene-YPL030W_CAT1 | rna-NM_001183844.1_CAT1 | cds-NP_015295.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:469105-470808:+ | gene-YPL030W_CBS1585 | rna-NM_001183844.1_CBS1585 | cds-NP_015295.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:483243-484946:+ | gene-YPL030W_CBS436 | rna-NM_001183844.1_CBS436 | cds-NP_015295.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:473297-475000:+ | gene-YPL030W_CBS6412 | rna-NM_001183844.1_CBS6412 | cds-NP_015295.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:465657-467360:+ | gene-YPL030W_CBS6413 | rna-NM_001183844.1_CBS6413 | cds-NP_015295.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:493511-495214:+ | gene-YPL030W_CENPK1137D | rna-NM_001183844.1_CENPK1137D | cds-NP_015295.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:463395-465098:+ | gene-YPL030W_EthanolRed | rna-NM_001183844.1_EthanolRed | cds-NP_015295.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:471225-472928:+ | gene-YPL030W_FaliES1 | rna-NM_001183844.1_FaliES1 | cds-NP_015295.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:79832-81535:+ | gene-YPL030W_JAY291 | rna-NM_001183844.1_JAY291 | cds-NP_015295.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:482944-484647:+ | gene-YPL030W_MUCL30387 | rna-NM_001183844.1_MUCL30387 | cds-NP_015295.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:482052-483755:+ | gene-YPL030W_MUCL30388 | rna-NM_001183844.1_MUCL30388 | cds-NP_015295.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:462421-464124:+ | gene-YPL030W_MUCL39482 | rna-NM_001183844.1_MUCL39482 | cds-NP_015295.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:521047-522750:+ | gene-YPL030W_MUCL42920 | rna-NM_001183844.1_MUCL42920 | cds-NP_015295.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:493526-495229:+ | gene-YPL030W_NCIM3186 | rna-NM_001183844.1_NCIM3186 | cds-NP_015295.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:469699-471402:+ | gene-YPL030W_NCYC1407 | rna-NM_001183844.1_NCYC1407 | cds-NP_015295.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:476345-478048:+ | gene-YPL030W_PE2H3 | rna-NM_001183844.1_PE2H3 | cds-NP_015295.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:475960-477663:+ | gene-YPL030W_PE2H4 | rna-NM_001183844.1_PE2H4 | cds-NP_015295.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:493543-495246:+ | gene-YPL030W_S288C | rna-NM_001183844.1_S288C | cds-NP_015295.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000029.1:36401-38104:+ | gene-YPL030W_SA1 | rna-NM_001183844.1_SA1 | cds-NP_015295.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:471024-472727:+ | gene-YPL030W_ThermosaccDry | rna-NM_001183844.1_ThermosaccDry | cds-NP_015295.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:485923-487626:+ | gene-YPL030W_VR1 | rna-NM_001183844.1_VR1 | cds-NP_015295.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:470316-472019:+ | gene-YPL030W_ZTW1 | rna-NM_001183844.1_ZTW1 | cds-NP_015295.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:470290-471993:+ | gene-YPL030W_Sparadoxus | rna-NM_001183844.1_Sparadoxus | cds-NP_015295.1_Sparadoxus | 91.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |