Gene name: TRM3
Reference locus (S288C): YDL112W
Gene biotype: protein_coding
Description: tRNA (guanosine(18)-2'-O)-methyltransferase; 2'-O-ribose methyltransferase; catalyzes the ribose methylation of the guanosine nucleotide at position 18 of tRNAs; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Top 10 interactors (score): TRM1 (0.946); NCL1 (0.941); PUS4 (0.931); TRM8 (0.923); TRM13 (0.911); TRM10 (0.903); TRM7 (0.899); TRM44 (0.898); TRM5 (0.882); RPA190 (0.864); TRM2 (0.858); UTP20 (0.824); TRM11 (0.815); ABP140 (0.811); GCD10 (0.804); DEG1 (0.8); YGR283C (0.777); MOD5 (0.773); YMR310C (0.763); TRM9 (0.751)
Homologues (species, bitscore): TARBP1 (Homo sapiens, 159.1); Gm17296 (Mus musculus, 159.1); si:dkey-85a20.4 (Danio rerio, 156.0); tarbp1 (Xenopus tropicalis, 124.8); CG18596 (Drosophila melanogaster, 134.4); T14B4.1 (Caenorhabditis elegans, 124.0); AT4G17610 (Arabidopsis thaliana, 147.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:243540-247850:+ | gene-YDL112W_AKU4011 | rna-NM_001180171.1_AKU4011 | cds-NP_010171.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:302101-306411:- | gene-YDL112W_BG1 | rna-NM_001180171.1_BG1 | cds-NP_010171.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:260951-265261:+ | gene-YDL112W_Bruggeman | rna-NM_001180171.1_Bruggeman | cds-NP_010171.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:257691-262001:+ | gene-YDL112W_CAT1 | rna-NM_001180171.1_CAT1 | cds-NP_010171.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:241800-246110:+ | gene-YDL112W_CBS1585 | rna-NM_001180171.1_CBS1585 | cds-NP_010171.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:258460-262770:+ | gene-YDL112W_CBS436 | rna-NM_001180171.1_CBS436 | cds-NP_010171.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:240226-244536:+ | gene-YDL112W_CBS6412 | rna-NM_001180171.1_CBS6412 | cds-NP_010171.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:259961-264271:+ | gene-YDL112W_CBS6413 | rna-NM_001180171.1_CBS6413 | cds-NP_010171.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:257687-261997:+ | gene-YDL112W_CENPK1137D | rna-NM_001180171.1_CENPK1137D | cds-NP_010171.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:254567-258877:+ | gene-YDL112W_EthanolRed | rna-NM_001180171.1_EthanolRed | cds-NP_010171.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:260537-264847:+ | gene-YDL112W_FaliES1 | rna-NM_001180171.1_FaliES1 | cds-NP_010171.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:30580-34890:+ | gene-YDL112W_JAY291 | rna-NM_001180171.1_JAY291 | cds-NP_010171.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:258738-263048:+ | gene-YDL112W_MUCL30387 | rna-NM_001180171.1_MUCL30387 | cds-NP_010171.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:249496-253806:+ | gene-YDL112W_MUCL30388 | rna-NM_001180171.1_MUCL30388 | cds-NP_010171.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:242906-247216:+ | gene-YDL112W_MUCL39482 | rna-NM_001180171.1_MUCL39482 | cds-NP_010171.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:164690-169000:+ | gene-YDL112W_MUCL42920 | rna-NM_001180171.1_MUCL42920 | cds-NP_010171.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:258838-263148:+ | gene-YDL112W_NCIM3186 | rna-NM_001180171.1_NCIM3186 | cds-NP_010171.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:242934-247244:+ | gene-YDL112W_NCYC1407 | rna-NM_001180171.1_NCYC1407 | cds-NP_010171.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:249691-254001:+ | gene-YDL112W_PE2H3 | rna-NM_001180171.1_PE2H3 | cds-NP_010171.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:249695-254005:+ | gene-YDL112W_PE2H4 | rna-NM_001180171.1_PE2H4 | cds-NP_010171.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:258915-263225:+ | gene-YDL112W_S288C | rna-NM_001180171.1_S288C | cds-NP_010171.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:171685-175995:- | gene-YDL112W_SA1 | rna-NM_001180171.1_SA1 | cds-NP_010171.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:260048-264358:+ | gene-YDL112W_ThermosaccDry | rna-NM_001180171.1_ThermosaccDry | cds-NP_010171.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:262153-266463:+ | gene-YDL112W_VR1 | rna-NM_001180171.1_VR1 | cds-NP_010171.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:257975-262285:+ | gene-YDL112W_ZTW1 | rna-NM_001180171.1_ZTW1 | cds-NP_010171.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:260131-264441:+ | gene-YDL112W_Sparadoxus | rna-NM_001180171.1_Sparadoxus | cds-NP_010171.1_Sparadoxus | 87.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |