Gene name: TRM2
Reference locus (S288C): YKR056W
Gene biotype: protein_coding
Description: tRNA methyltransferase; 5-methylates the uridine residue at position 54 of tRNAs and may also have a role in tRNA stabilization or maturation; endo-exonuclease with a role in DNA repair
Top 10 interactors (score): YTM1 (0.988); ERB1 (0.988); RRP12 (0.984); UTP13 (0.983); NCL1 (0.981); RPF2 (0.98); TRM1 (0.979); TRM11 (0.977); TSR1 (0.975); UTP21 (0.968); PUF6 (0.963); SDA1 (0.958); TRM82 (0.951); ARX1 (0.947); NOC2 (0.945); NOP2 (0.944); NAN1 (0.938); NOG1 (0.938); GCD10 (0.936); PWP2 (0.935)
Homologues (species, bitscore): TRMT2A (Homo sapiens, 87.0); Trmt2a (Mus musculus, 84.0); trmt2a (Danio rerio, 104.0); trmt2a (Xenopus tropicalis, 88.2); CG3808 (Drosophila melanogaster, 92.4); H24K24.4 (Caenorhabditis elegans, 78.2); AT3G21300 (Arabidopsis thaliana, 114.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:534745-536663:+ | gene-YKR056W_AKU4011 | rna-NM_001179846.1_AKU4011 | cds-NP_012982.2_AKU4011 | 99.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:106863-108781:- | gene-YKR056W_BG1 | rna-NM_001179846.1_BG1 | cds-NP_012982.2_BG1 | 99.3 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:556922-558840:+ | gene-YKR056W_Bruggeman | rna-NM_001179846.1_Bruggeman | cds-NP_012982.2_Bruggeman | 99.4 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:553346-555264:+ | gene-YKR056W_CAT1 | rna-NM_001179846.1_CAT1 | cds-NP_012982.2_CAT1 | 99.3 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:547485-549403:+ | gene-YKR056W_CBS1585 | rna-NM_001179846.1_CBS1585 | cds-NP_012982.2_CBS1585 | 99.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:546317-548235:+ | gene-YKR056W_CBS436 | rna-NM_001179846.1_CBS436 | cds-NP_012982.2_CBS436 | 99.4 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:531663-533581:+ | gene-YKR056W_CBS6412 | rna-NM_001179846.1_CBS6412 | cds-NP_012982.2_CBS6412 | 99.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:547305-549223:+ | gene-YKR056W_CBS6413 | rna-NM_001179846.1_CBS6413 | cds-NP_012982.2_CBS6413 | 99.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:549104-551023:+ | gene-YKR056W_CENPK1137D | rna-NM_001179846.1_CENPK1137D | cds-NP_012982.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:545066-546984:+ | gene-YKR056W_EthanolRed | rna-NM_001179846.1_EthanolRed | cds-NP_012982.2_EthanolRed | 99.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:548203-550121:+ | gene-YKR056W_FaliES1 | rna-NM_001179846.1_FaliES1 | cds-NP_012982.2_FaliES1 | 99.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000077.1:3680-5598:- | gene-YKR056W_JAY291 | rna-NM_001179846.1_JAY291 | cds-NP_012982.2_JAY291 | 99.4 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:557320-559238:+ | gene-YKR056W_MUCL30387 | rna-NM_001179846.1_MUCL30387 | cds-NP_012982.2_MUCL30387 | 99.4 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:551682-553600:+ | gene-YKR056W_MUCL30388 | rna-NM_001179846.1_MUCL30388 | cds-NP_012982.2_MUCL30388 | 99.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:546813-548731:+ | gene-YKR056W_MUCL39482 | rna-NM_001179846.1_MUCL39482 | cds-NP_012982.2_MUCL39482 | 99.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:552836-554754:+ | gene-YKR056W_MUCL42920 | rna-NM_001179846.1_MUCL42920 | cds-NP_012982.2_MUCL42920 | 99.4 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:549437-551356:+ | gene-YKR056W_NCIM3186 | rna-NM_001179846.1_NCIM3186 | cds-NP_012982.2_NCIM3186 | 99.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:547027-548945:+ | gene-YKR056W_NCYC1407 | rna-NM_001179846.1_NCYC1407 | cds-NP_012982.2_NCYC1407 | 99.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:572393-574311:+ | gene-YKR056W_PE2H3 | rna-NM_001179846.1_PE2H3 | cds-NP_012982.2_PE2H3 | 99.4 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:556788-558706:+ | gene-YKR056W_PE2H4 | rna-NM_001179846.1_PE2H4 | cds-NP_012982.2_PE2H4 | 99.3 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:549448-551367:+ | gene-YKR056W_S288C | rna-NM_001179846.1_S288C | cds-NP_012982.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000093.1:32549-34467:+ | gene-YKR056W_SA1 | rna-NM_001179846.1_SA1 | cds-NP_012982.2_SA1 | 99.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:547442-549360:+ | gene-YKR056W_ThermosaccDry | rna-NM_001179846.1_ThermosaccDry | cds-NP_012982.2_ThermosaccDry | 99.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:547461-549379:+ | gene-YKR056W_VR1 | rna-NM_001179846.1_VR1 | cds-NP_012982.2_VR1 | 99.4 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:545431-547349:+ | gene-YKR056W_ZTW1 | rna-NM_001179846.1_ZTW1 | cds-NP_012982.2_ZTW1 | 99.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:570807-572714:+ | gene-YKR056W_Sparadoxus | rna-NM_001179846.1_Sparadoxus | cds-NP_012982.2_Sparadoxus | 88.4 | 99.2 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |