Gene name: TRM13
Reference locus (S288C): YOL125W
Gene biotype: protein_coding
Description: tRNA:m(4)X modification enzyme TRM13; 2'-O-methyltransferase; responsible for modification of tRNA at position 4; C-terminal domain has similarity to Rossmann-fold (RFM) superfamily of RNA methyltransferases; Belongs to the methyltransferase TRM13 family
Top 10 interactors (score): TRM11 (0.955); TRM3 (0.911); TRM7 (0.911); TRM44 (0.901); ALR2 (0.773); TAD1 (0.76); TRM82 (0.74); TRM10 (0.739); TRM8 (0.738); TRM2 (0.736); NCL1 (0.726); TRM12 (0.721); TAN1 (0.715); TRM9 (0.708); ALR1 (0.705); YGK3 (0.698); TRM5 (0.682); UTP13 (0.677); TRM1 (0.671); RTS2 (0.656)
Homologues (species, bitscore): TRMT13 (Homo sapiens, 158.7); Trmt13 (Mus musculus, 157.5); trmt13 (Danio rerio, 155.6); trmt13 (Xenopus tropicalis, 172.6); CG18048 (Drosophila melanogaster, 169.1); Y49A3A.3 (Caenorhabditis elegans, 110.5); AT4G01880 (Arabidopsis thaliana, 146.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:72489-73919:+ | gene-YOL125W_AKU4011 | rna-NM_001183379.2_AKU4011 | cds-NP_014516.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:38113-39543:+ | gene-YOL125W_BG1 | rna-NM_001183379.2_BG1 | cds-NP_014516.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:73764-75194:+ | gene-YOL125W_Bruggeman | rna-NM_001183379.2_Bruggeman | cds-NP_014516.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:72726-74156:+ | gene-YOL125W_CAT1 | rna-NM_001183379.2_CAT1 | cds-NP_014516.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:66966-68396:+ | gene-YOL125W_CBS1585 | rna-NM_001183379.2_CBS1585 | cds-NP_014516.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:72817-74247:+ | gene-YOL125W_CBS436 | rna-NM_001183379.2_CBS436 | cds-NP_014516.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:66829-68259:+ | gene-YOL125W_CBS6412 | rna-NM_001183379.2_CBS6412 | cds-NP_014516.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:73297-74727:+ | gene-YOL125W_CBS6413 | rna-NM_001183379.2_CBS6413 | cds-NP_014516.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:83731-85161:+ | gene-YOL125W_CENPK1137D | rna-NM_001183379.2_CENPK1137D | cds-NP_014516.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:70739-72169:+ | gene-YOL125W_EthanolRed | rna-NM_001183379.2_EthanolRed | cds-NP_014516.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:72768-74198:+ | gene-YOL125W_FaliES1 | rna-NM_001183379.2_FaliES1 | cds-NP_014516.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000329.1:8349-9779:- | gene-YOL125W_JAY291 | rna-NM_001183379.2_JAY291 | cds-NP_014516.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:78405-79835:+ | gene-YOL125W_MUCL30387 | rna-NM_001183379.2_MUCL30387 | cds-NP_014516.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:81404-82834:+ | gene-YOL125W_MUCL30388 | rna-NM_001183379.2_MUCL30388 | cds-NP_014516.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:74904-76334:+ | gene-YOL125W_MUCL39482 | rna-NM_001183379.2_MUCL39482 | cds-NP_014516.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:90783-92213:+ | gene-YOL125W_MUCL42920 | rna-NM_001183379.2_MUCL42920 | cds-NP_014516.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:83723-85153:+ | gene-YOL125W_NCIM3186 | rna-NM_001183379.2_NCIM3186 | cds-NP_014516.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:80939-82369:+ | gene-YOL125W_NCYC1407 | rna-NM_001183379.2_NCYC1407 | cds-NP_014516.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:59372-60802:+ | gene-YOL125W_PE2H3 | rna-NM_001183379.2_PE2H3 | cds-NP_014516.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:76320-77750:+ | gene-YOL125W_PE2H4 | rna-NM_001183379.2_PE2H4 | cds-NP_014516.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:83834-85264:+ | gene-YOL125W_S288C | rna-NM_001183379.2_S288C | cds-NP_014516.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:57262-58692:+ | gene-YOL125W_SA1 | rna-NM_001183379.2_SA1 | cds-NP_014516.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:71906-73336:+ | gene-YOL125W_ThermosaccDry | rna-NM_001183379.2_ThermosaccDry | cds-NP_014516.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:72568-73998:+ | gene-YOL125W_VR1 | rna-NM_001183379.2_VR1 | cds-NP_014516.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:71660-73090:+ | gene-YOL125W_ZTW1 | rna-NM_001183379.2_ZTW1 | cds-NP_014516.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:74401-75833:+ | gene-YOL125W_Sparadoxus | rna-NM_001183379.2_Sparadoxus | cds-NP_014516.1_Sparadoxus | 86.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |