Gene name: TRM11
Reference locus (S288C): YOL124C
Gene biotype: protein_coding
Description: Catalytic subunit of adoMet-dependent tRNA methyltransferase complex; required for the methylation of the guanosine nucleotide at position 10 (m2G10) in tRNAs; contains a THUMP domain and a methyltransferase domain; another complex member is Trm112p; Belongs to the class I-like SAM-binding methyltransferase superfamily. TRM11 methyltransferase family
Top 10 interactors (score): TRM82 (0.999); TRM112 (0.999); TRM8 (0.998); GCD10 (0.998); GCD14 (0.997); MTQ2 (0.993); TRM1 (0.993); PWP2 (0.991); RRB1 (0.99); NCL1 (0.99); TRM9 (0.989); NOP2 (0.988); DUS1 (0.987); MRT4 (0.987); TRM10 (0.985); BUD23 (0.982); YTM1 (0.98); UTP13 (0.978); AAH1 (0.977); TRM2 (0.977)
Homologues (species, bitscore): TRMT11 (Homo sapiens, 267.7); Trmt11 (Mus musculus, 258.8); trmt11 (Danio rerio, 237.7); trmt11 (Xenopus tropicalis, 245.7); CG1074 (Drosophila melanogaster, 223.4); Y71F9AL.1 (Caenorhabditis elegans, 186.8); AT3G26410 (Arabidopsis thaliana, 220.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:74108-75409:- | gene-YOL124C_AKU4011 | rna-NM_001183378.1_AKU4011 | cds-NP_014517.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:39735-41036:- | gene-YOL124C_BG1 | rna-NM_001183378.1_BG1 | cds-NP_014517.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:75383-76684:- | gene-YOL124C_Bruggeman | rna-NM_001183378.1_Bruggeman | cds-NP_014517.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:74345-75646:- | gene-YOL124C_CAT1 | rna-NM_001183378.1_CAT1 | cds-NP_014517.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:68585-69886:- | gene-YOL124C_CBS1585 | rna-NM_001183378.1_CBS1585 | cds-NP_014517.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:74439-75740:- | gene-YOL124C_CBS436 | rna-NM_001183378.1_CBS436 | cds-NP_014517.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:68448-69749:- | gene-YOL124C_CBS6412 | rna-NM_001183378.1_CBS6412 | cds-NP_014517.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:74916-76217:- | gene-YOL124C_CBS6413 | rna-NM_001183378.1_CBS6413 | cds-NP_014517.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:85353-86654:- | gene-YOL124C_CENPK1137D | rna-NM_001183378.1_CENPK1137D | cds-NP_014517.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:72359-73660:- | gene-YOL124C_EthanolRed | rna-NM_001183378.1_EthanolRed | cds-NP_014517.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:74388-75689:- | gene-YOL124C_FaliES1 | rna-NM_001183378.1_FaliES1 | cds-NP_014517.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000329.1:6856-8157:+ | gene-YOL124C_JAY291 | rna-NM_001183378.1_JAY291 | cds-NP_014517.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:80024-81325:- | gene-YOL124C_MUCL30387 | rna-NM_001183378.1_MUCL30387 | cds-NP_014517.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:83023-84324:- | gene-YOL124C_MUCL30388 | rna-NM_001183378.1_MUCL30388 | cds-NP_014517.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:76523-77824:- | gene-YOL124C_MUCL39482 | rna-NM_001183378.1_MUCL39482 | cds-NP_014517.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:92402-93703:- | gene-YOL124C_MUCL42920 | rna-NM_001183378.1_MUCL42920 | cds-NP_014517.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:85345-86646:- | gene-YOL124C_NCIM3186 | rna-NM_001183378.1_NCIM3186 | cds-NP_014517.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:82558-83859:- | gene-YOL124C_NCYC1407 | rna-NM_001183378.1_NCYC1407 | cds-NP_014517.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:60994-62295:- | gene-YOL124C_PE2H3 | rna-NM_001183378.1_PE2H3 | cds-NP_014517.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:77942-79243:- | gene-YOL124C_PE2H4 | rna-NM_001183378.1_PE2H4 | cds-NP_014517.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:85456-86757:- | gene-YOL124C_S288C | rna-NM_001183378.1_S288C | cds-NP_014517.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:58884-60185:- | gene-YOL124C_SA1 | rna-NM_001183378.1_SA1 | cds-NP_014517.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:73526-74827:- | gene-YOL124C_ThermosaccDry | rna-NM_001183378.1_ThermosaccDry | cds-NP_014517.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:74189-75490:- | gene-YOL124C_VR1 | rna-NM_001183378.1_VR1 | cds-NP_014517.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:73278-74579:- | gene-YOL124C_ZTW1 | rna-NM_001183378.1_ZTW1 | cds-NP_014517.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:76001-77302:- | gene-YOL124C_Sparadoxus | rna-NM_001183378.1_Sparadoxus | cds-NP_014517.1_Sparadoxus | 91.0 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |