Gene name: TRL1
Reference locus (S288C): YJL087C
Gene biotype: protein_coding
Description: tRNA ligase; required for tRNA splicing and for both splicing and translation of HAC1 mRNA in the UPR; has phosphodiesterase, polynucleotide kinase, and ligase activities; localized at the inner nuclear envelope and partially to polysomes
Top 10 interactors (score): IRE1 (0.961); SEN54 (0.956); TPT1 (0.942); SEN34 (0.922); SEN2 (0.92); SEN15 (0.92); HAC1 (0.895); FOL1 (0.823); CET1 (0.73); KAR2 (0.719); SKI2 (0.709); MGM101 (0.684); CHC1 (0.67); CDC60 (0.65); THR1 (0.611); DOP1 (0.593); FZO1 (0.593); RSA4 (0.588); HOM3 (0.578); FAS1 (0.576)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:252717-255200:- | gene-YJL087C_AKU4011 | rna-NM_001181520.1_AKU4011 | cds-NP_012448.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:359254-361737:+ | gene-YJL087C_BG1 | rna-NM_001181520.1_BG1 | cds-NP_012448.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:264162-266645:- | gene-YJL087C_Bruggeman | rna-NM_001181520.1_Bruggeman | cds-NP_012448.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:269056-271539:- | gene-YJL087C_CAT1 | rna-NM_001181520.1_CAT1 | cds-NP_012448.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:264378-266861:- | gene-YJL087C_CBS1585 | rna-NM_001181520.1_CBS1585 | cds-NP_012448.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:282492-284975:- | gene-YJL087C_CBS436 | rna-NM_001181520.1_CBS436 | cds-NP_012448.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:253475-255958:- | gene-YJL087C_CBS6412 | rna-NM_001181520.1_CBS6412 | cds-NP_012448.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:254830-257313:- | gene-YJL087C_CBS6413 | rna-NM_001181520.1_CBS6413 | cds-NP_012448.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:252466-254949:- | gene-YJL087C_CENPK1137D | rna-NM_001181520.1_CENPK1137D | cds-NP_012448.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:256564-259047:- | gene-YJL087C_EthanolRed | rna-NM_001181520.1_EthanolRed | cds-NP_012448.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:268138-270621:- | gene-YJL087C_FaliES1 | rna-NM_001181520.1_FaliES1 | cds-NP_012448.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000138.1:65762-68245:- | gene-YJL087C_JAY291 | rna-NM_001181520.1_JAY291 | cds-NP_012448.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:266432-268915:- | gene-YJL087C_MUCL30387 | rna-NM_001181520.1_MUCL30387 | cds-NP_012448.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:262509-264992:- | gene-YJL087C_MUCL30388 | rna-NM_001181520.1_MUCL30388 | cds-NP_012448.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:257135-259618:- | gene-YJL087C_MUCL39482 | rna-NM_001181520.1_MUCL39482 | cds-NP_012448.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:263340-265823:- | gene-YJL087C_MUCL42920 | rna-NM_001181520.1_MUCL42920 | cds-NP_012448.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:269981-272464:- | gene-YJL087C_NCIM3186 | rna-NM_001181520.1_NCIM3186 | cds-NP_012448.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:255823-258306:- | gene-YJL087C_NCYC1407 | rna-NM_001181520.1_NCYC1407 | cds-NP_012448.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:268188-270671:- | gene-YJL087C_PE2H3 | rna-NM_001181520.1_PE2H3 | cds-NP_012448.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:267832-270315:- | gene-YJL087C_PE2H4 | rna-NM_001181520.1_PE2H4 | cds-NP_012448.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:270002-272485:- | gene-YJL087C_S288C | rna-NM_001181520.1_S288C | cds-NP_012448.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:65692-68175:- | gene-YJL087C_SA1 | rna-NM_001181520.1_SA1 | cds-NP_012448.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:261550-264033:- | gene-YJL087C_ThermosaccDry | rna-NM_001181520.1_ThermosaccDry | cds-NP_012448.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:263065-265548:- | gene-YJL087C_VR1 | rna-NM_001181520.1_VR1 | cds-NP_012448.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:242910-245393:- | gene-YJL087C_ZTW1 | rna-NM_001181520.1_ZTW1 | cds-NP_012448.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:266984-269467:- | gene-YJL087C_Sparadoxus | rna-NM_001181520.1_Sparadoxus | cds-NP_012448.1_Sparadoxus | 88.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |