Gene name: TRI1
Reference locus (S288C): YMR233W
Gene biotype: protein_coding
Description: Upstream activation factor subunit uaf30; Protein TRI1; Non-essential sumoylated protein of unknown function; similar to components of human SWI/SNF complex including SMRD3; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm, nucleus and nucleolus; TRI1 has a paralog, UAF30, that arose from the whole genome duplication
Top 10 interactors (score): ARP7 (0.781); SNF5 (0.768); YMR087W (0.747); DIT2 (0.719); RMD9 (0.706); HER1 (0.696); POA1 (0.689); TRE1 (0.676); SFH1 (0.661); RSC8 (0.66); SWI3 (0.66); PMP3 (0.636); SPT7 (0.624); SNF12 (0.614); SWP82 (0.575); GCN5 (0.564); ERG11 (0.56); RRN5 (0.527); MRS3 (0.525); TOP2 (0.517)
Homologues (species, bitscore): Non2 (Drosophila melanogaster, 53.9); T24G10.2 (Caenorhabditis elegans, 63.9); AT1G49520 (Arabidopsis thaliana, 95.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:779092-779772:+ | gene-YMR233W_AKU4011 | rna-NM_001182740.1_AKU4011 | cds-NP_013960.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:174819-175499:- | gene-YMR233W_BG1 | rna-NM_001182740.1_BG1 | cds-NP_013960.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:723318-723998:+ | gene-YMR233W_Bruggeman | rna-NM_001182740.1_Bruggeman | cds-NP_013960.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:727211-727891:+ | gene-YMR233W_CAT1 | rna-NM_001182740.1_CAT1 | cds-NP_013960.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:711352-712031:+ | gene-YMR233W_CBS1585 | rna-NM_001182740.1_CBS1585 | cds-NP_013960.1_CBS1585 | 99.8 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:715620-716300:+ | gene-YMR233W_CBS436 | rna-NM_001182740.1_CBS436 | cds-NP_013960.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:822914-823593:+ | gene-YMR233W_CBS6412 | rna-NM_001182740.1_CBS6412 | cds-NP_013960.1_CBS6412 | 99.8 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:710504-711184:+ | gene-YMR233W_CBS6413 | rna-NM_001182740.1_CBS6413 | cds-NP_013960.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:733928-734608:+ | gene-YMR233W_CENPK1137D | rna-NM_001182740.1_CENPK1137D | cds-NP_013960.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:771559-772238:+ | gene-YMR233W_EthanolRed | rna-NM_001182740.1_EthanolRed | cds-NP_013960.1_EthanolRed | 99.8 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:717211-717890:+ | gene-YMR233W_FaliES1 | rna-NM_001182740.1_FaliES1 | cds-NP_013960.1_FaliES1 | 99.8 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:68128-68808:- | gene-YMR233W_JAY291 | rna-NM_001182740.1_JAY291 | cds-NP_013960.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:717102-717782:+ | gene-YMR233W_MUCL30387 | rna-NM_001182740.1_MUCL30387 | cds-NP_013960.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:724329-725009:+ | gene-YMR233W_MUCL30388 | rna-NM_001182740.1_MUCL30388 | cds-NP_013960.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:712422-713101:+ | gene-YMR233W_MUCL39482 | rna-NM_001182740.1_MUCL39482 | cds-NP_013960.1_MUCL39482 | 99.8 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:719766-720446:+ | gene-YMR233W_MUCL42920 | rna-NM_001182740.1_MUCL42920 | cds-NP_013960.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:739139-739819:+ | gene-YMR233W_NCIM3186 | rna-NM_001182740.1_NCIM3186 | cds-NP_013960.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:712079-712758:+ | gene-YMR233W_NCYC1407 | rna-NM_001182740.1_NCYC1407 | cds-NP_013960.1_NCYC1407 | 99.8 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:721958-722638:+ | gene-YMR233W_PE2H3 | rna-NM_001182740.1_PE2H3 | cds-NP_013960.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:722976-723656:+ | gene-YMR233W_PE2H4 | rna-NM_001182740.1_PE2H4 | cds-NP_013960.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:739185-739865:+ | gene-YMR233W_S288C | rna-NM_001182740.1_S288C | cds-NP_013960.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:68243-68923:- | gene-YMR233W_SA1 | rna-NM_001182740.1_SA1 | cds-NP_013960.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:713382-714061:+ | gene-YMR233W_ThermosaccDry | rna-NM_001182740.1_ThermosaccDry | cds-NP_013960.1_ThermosaccDry | 99.8 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:726493-727173:+ | gene-YMR233W_VR1 | rna-NM_001182740.1_VR1 | cds-NP_013960.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:129085-129764:+ | gene-YMR233W_ZTW1 | rna-NM_001182740.1_ZTW1 | cds-NP_013960.1_ZTW1 | 99.8 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:731247-731927:+ | gene-YMR233W_Sparadoxus | rna-NM_001182740.1_Sparadoxus | cds-NP_013960.1_Sparadoxus | 87.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |