Gene name: TRF5
Reference locus (S288C): YNL299W
Gene biotype: protein_coding
Description: Non-canonical poly(A) polymerase; involved in nuclear RNA degradation as a component of the TRAMP complex; catalyzes polyadenylation of hypomodified tRNAs, and snoRNA and rRNA precursors; overlapping but non-redundant functions with Pap2p; Belongs to the DNA polymerase type-B-like family
Top 10 interactors (score): MTR4 (0.999); AIR1 (0.999); AIR2 (0.999); PAP2 (0.989); RRP6 (0.988); PAP1 (0.969); DIS3 (0.953); SKI2 (0.917); DHR2 (0.89); RAT1 (0.861); RRP40 (0.859); MTR3 (0.841); RRP46 (0.834); SKI3 (0.823); CSL4 (0.821); XRN1 (0.818); LRP1 (0.817); RRP45 (0.81); NAB3 (0.808); SKI8 (0.805)
Homologues (species, bitscore): PAPD5 (Homo sapiens, 194.9); Papd5 (Mus musculus, 194.9); papd7 (Danio rerio, 202.6); papd5 (Xenopus tropicalis, 169.1); Trf4-1 (Drosophila melanogaster, 201.8); gld-4 (Caenorhabditis elegans, 166.8); AT5G53770 (Arabidopsis thaliana, 186.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:60329-62257:+ | gene-YNL299W_AKU4011 | rna-NM_001183137.1_AKU4011 | cds-NP_014100.2_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000074.1:28386-30314:- | gene-YNL299W_BG1 | rna-NM_001183137.1_BG1 | cds-NP_014100.2_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:69673-71601:+ | gene-YNL299W_Bruggeman | rna-NM_001183137.1_Bruggeman | cds-NP_014100.2_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:72281-74209:+ | gene-YNL299W_CAT1 | rna-NM_001183137.1_CAT1 | cds-NP_014100.2_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:60660-62588:+ | gene-YNL299W_CBS1585 | rna-NM_001183137.1_CBS1585 | cds-NP_014100.2_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:61151-63079:+ | gene-YNL299W_CBS436 | rna-NM_001183137.1_CBS436 | cds-NP_014100.2_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:57320-59248:+ | gene-YNL299W_CBS6412 | rna-NM_001183137.1_CBS6412 | cds-NP_014100.2_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:57508-59436:+ | gene-YNL299W_CBS6413 | rna-NM_001183137.1_CBS6413 | cds-NP_014100.2_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:60350-62278:+ | gene-YNL299W_CENPK1137D | rna-NM_001183137.1_CENPK1137D | cds-NP_014100.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:57351-59279:+ | gene-YNL299W_EthanolRed | rna-NM_001183137.1_EthanolRed | cds-NP_014100.2_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:58250-60178:+ | gene-YNL299W_FaliES1 | rna-NM_001183137.1_FaliES1 | cds-NP_014100.2_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000171.1:28040-29968:- | gene-YNL299W_JAY291 | rna-NM_001183137.1_JAY291 | cds-NP_014100.2_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:69923-71851:+ | gene-YNL299W_MUCL30387 | rna-NM_001183137.1_MUCL30387 | cds-NP_014100.2_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:62956-64884:+ | gene-YNL299W_MUCL30388 | rna-NM_001183137.1_MUCL30388 | cds-NP_014100.2_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:58297-60225:+ | gene-YNL299W_MUCL39482 | rna-NM_001183137.1_MUCL39482 | cds-NP_014100.2_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:59987-61915:+ | gene-YNL299W_MUCL42920 | rna-NM_001183137.1_MUCL42920 | cds-NP_014100.2_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:66486-68414:+ | gene-YNL299W_NCIM3186 | rna-NM_001183137.1_NCIM3186 | cds-NP_014100.2_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:59629-61557:+ | gene-YNL299W_NCYC1407 | rna-NM_001183137.1_NCYC1407 | cds-NP_014100.2_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:56828-58756:+ | gene-YNL299W_PE2H3 | rna-NM_001183137.1_PE2H3 | cds-NP_014100.2_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:56216-58144:+ | gene-YNL299W_PE2H4 | rna-NM_001183137.1_PE2H4 | cds-NP_014100.2_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:66517-68445:+ | gene-YNL299W_S288C | rna-NM_001183137.1_S288C | cds-NP_014100.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000052.1:28772-30700:- | gene-YNL299W_SA1 | rna-NM_001183137.1_SA1 | cds-NP_014100.2_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:59107-61035:+ | gene-YNL299W_ThermosaccDry | rna-NM_001183137.1_ThermosaccDry | cds-NP_014100.2_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:71646-73574:+ | gene-YNL299W_VR1 | rna-NM_001183137.1_VR1 | cds-NP_014100.2_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000029.1:50319-52247:+ | gene-YNL299W_ZTW1 | rna-NM_001183137.1_ZTW1 | cds-NP_014100.2_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:68387-70315:+ | gene-YNL299W_Sparadoxus | rna-NM_001183137.1_Sparadoxus | cds-NP_014100.2_Sparadoxus | 88.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |