Gene name: TRE1
Reference locus (S288C): YPL176C
Gene biotype: protein_coding
Description: Uncharacterized protein TRE1; Transferrin receptor-like protein; plasma membrane protein that binds Bsd2p and regulates ubiquitination and vacuolar degradation of the metal transporter Smf1p; functionally redundant with Tre2p; TRE1 has a paralog, TRE2, that arose from the whole genome duplication
Top 10 interactors (score): BSD2 (0.965); RSP5 (0.929); SMF1 (0.817); SSH4 (0.755); EAR1 (0.754); BUL1 (0.744); PPN1 (0.718); SMX3 (0.698); ALF1 (0.691); YMR087W (0.676); TRI1 (0.676); CPS1 (0.674); LAA1 (0.672); YIR014W (0.65); SBE2 (0.618); BUL2 (0.611); FUR4 (0.579); TUL1 (0.576); POA1 (0.534); PRM10 (0.526)
Homologues (species, bitscore): TFR2 (Homo sapiens, 105.1); Tfr2 (Mus musculus, 105.1); tfr1b (Danio rerio, 99.4); naaladl1 (Xenopus tropicalis, 102.8); R57.1 (Caenorhabditis elegans, 97.1); AT5G19740 (Arabidopsis thaliana, 111.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:193684-196035:- | gene-YPL176C_AKU4011 | rna-NM_001183990.1_AKU4011 | cds-NP_015149.1_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:399345-401696:- | gene-YPL176C_BG1 | rna-NM_001183990.1_BG1 | cds-NP_015149.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:219528-221879:- | gene-YPL176C_Bruggeman | rna-NM_001183990.1_Bruggeman | cds-NP_015149.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:216339-218690:- | gene-YPL176C_CAT1 | rna-NM_001183990.1_CAT1 | cds-NP_015149.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:197746-200097:- | gene-YPL176C_CBS1585 | rna-NM_001183990.1_CBS1585 | cds-NP_015149.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:212402-214753:- | gene-YPL176C_CBS436 | rna-NM_001183990.1_CBS436 | cds-NP_015149.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:202422-204773:- | gene-YPL176C_CBS6412 | rna-NM_001183990.1_CBS6412 | cds-NP_015149.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:194385-196736:- | gene-YPL176C_CBS6413 | rna-NM_001183990.1_CBS6413 | cds-NP_015149.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:215890-218241:- | gene-YPL176C_CENPK1137D | rna-NM_001183990.1_CENPK1137D | cds-NP_015149.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:192424-194775:- | gene-YPL176C_EthanolRed | rna-NM_001183990.1_EthanolRed | cds-NP_015149.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:200016-202367:- | gene-YPL176C_FaliES1 | rna-NM_001183990.1_FaliES1 | cds-NP_015149.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:163541-165892:+ | gene-YPL176C_JAY291 | rna-NM_001183990.1_JAY291 | cds-NP_015149.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:210911-213262:- | gene-YPL176C_MUCL30387 | rna-NM_001183990.1_MUCL30387 | cds-NP_015149.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:208932-211283:- | gene-YPL176C_MUCL30388 | rna-NM_001183990.1_MUCL30388 | cds-NP_015149.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:191075-193426:- | gene-YPL176C_MUCL39482 | rna-NM_001183990.1_MUCL39482 | cds-NP_015149.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:247763-250114:- | gene-YPL176C_MUCL42920 | rna-NM_001183990.1_MUCL42920 | cds-NP_015149.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:215995-218346:- | gene-YPL176C_NCIM3186 | rna-NM_001183990.1_NCIM3186 | cds-NP_015149.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:197531-199882:- | gene-YPL176C_NCYC1407 | rna-NM_001183990.1_NCYC1407 | cds-NP_015149.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:204964-207315:- | gene-YPL176C_PE2H3 | rna-NM_001183990.1_PE2H3 | cds-NP_015149.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:204607-206958:- | gene-YPL176C_PE2H4 | rna-NM_001183990.1_PE2H4 | cds-NP_015149.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:216012-218363:- | gene-YPL176C_S288C | rna-NM_001183990.1_S288C | cds-NP_015149.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:155317-157668:+ | gene-YPL176C_SA1 | rna-NM_001183990.1_SA1 | cds-NP_015149.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:199814-202165:- | gene-YPL176C_ThermosaccDry | rna-NM_001183990.1_ThermosaccDry | cds-NP_015149.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:214737-217088:- | gene-YPL176C_VR1 | rna-NM_001183990.1_VR1 | cds-NP_015149.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:199143-201494:- | gene-YPL176C_ZTW1 | rna-NM_001183990.1_ZTW1 | cds-NP_015149.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:200716-203067:- | gene-YPL176C_Sparadoxus | rna-NM_001183990.1_Sparadoxus | cds-NP_015149.1_Sparadoxus | 89.2 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |