Gene name: TRA1
Reference locus (S288C): YHR099W
Gene biotype: protein_coding
Description: Transcription-associated protein 1; Subunit of SAGA and NuA4 histone acetyltransferase complexes; interacts with acidic activators (e.g., Gal4p) which leads to transcription activation; similar to human TRRAP, which is a cofactor for c-Myc mediated oncogenic transformation; Belongs to the PI3/PI4-kinase family. TRA1 subfamily
Top 10 interactors (score): SWC4 (0.999); TTI1 (0.999); RVB2 (0.999); TAF6 (0.999); SGF29 (0.999); YAF9 (0.999); SPT3 (0.999); SGF11 (0.999); ARP4 (0.999); UBP8 (0.999); EAF3 (0.999); TAF10 (0.999); TEL2 (0.999); SPT7 (0.999); HFI1 (0.999); NGG1 (0.999); TAF5 (0.999); EAF7 (0.999); EPL1 (0.999); TAF9 (0.999)
Homologues (species, bitscore): TRRAP (Homo sapiens, 1350.5); Trrap (Mus musculus, 1360.9); trrap (Danio rerio, 1315.8); trrap (Xenopus tropicalis, 1327.0); Nipped-A (Drosophila melanogaster, 1121.3); trr-1 (Caenorhabditis elegans, 438.0); AT2G17930 (Arabidopsis thaliana, 1299.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:289672-300906:+ | gene-YHR099W_AKU4011 | rna-NM_001179229.1_AKU4011 | cds-NP_011967.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:216994-228228:- | gene-YHR099W_BG1 | rna-NM_001179229.1_BG1 | cds-NP_011967.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:296967-308201:+ | gene-YHR099W_Bruggeman | rna-NM_001179229.1_Bruggeman | cds-NP_011967.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:292117-303351:+ | gene-YHR099W_CAT1 | rna-NM_001179229.1_CAT1 | cds-NP_011967.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:288701-299935:+ | gene-YHR099W_CBS1585 | rna-NM_001179229.1_CBS1585 | cds-NP_011967.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:286063-297294:+ | gene-YHR099W_CBS436 | rna-NM_001179229.1_CBS436 | cds-NP_011967.1_CBS436 | 99.9 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:290532-301766:+ | gene-YHR099W_CBS6412 | rna-NM_001179229.1_CBS6412 | cds-NP_011967.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:289725-300959:+ | gene-YHR099W_CBS6413 | rna-NM_001179229.1_CBS6413 | cds-NP_011967.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:295932-307166:+ | gene-YHR099W_CENPK1137D | rna-NM_001179229.1_CENPK1137D | cds-NP_011967.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:348585-359819:+ | gene-YHR099W_EthanolRed | rna-NM_001179229.1_EthanolRed | cds-NP_011967.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:290073-301307:+ | gene-YHR099W_FaliES1 | rna-NM_001179229.1_FaliES1 | cds-NP_011967.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000045.1:10656-21890:+ | gene-YHR099W_JAY291 | rna-NM_001179229.1_JAY291 | cds-NP_011967.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:296444-307678:+ | gene-YHR099W_MUCL30387 | rna-NM_001179229.1_MUCL30387 | cds-NP_011967.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:296349-307583:+ | gene-YHR099W_MUCL30388 | rna-NM_001179229.1_MUCL30388 | cds-NP_011967.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:289038-300272:+ | gene-YHR099W_MUCL39482 | rna-NM_001179229.1_MUCL39482 | cds-NP_011967.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:295292-306526:+ | gene-YHR099W_MUCL42920 | rna-NM_001179229.1_MUCL42920 | cds-NP_011967.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:302643-313877:+ | gene-YHR099W_NCIM3186 | rna-NM_001179229.1_NCIM3186 | cds-NP_011967.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:291247-302481:+ | gene-YHR099W_NCYC1407 | rna-NM_001179229.1_NCYC1407 | cds-NP_011967.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:290692-301926:+ | gene-YHR099W_PE2H3 | rna-NM_001179229.1_PE2H3 | cds-NP_011967.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:298119-309353:+ | gene-YHR099W_PE2H4 | rna-NM_001179229.1_PE2H4 | cds-NP_011967.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:302761-313995:+ | gene-YHR099W_S288C | rna-NM_001179229.1_S288C | cds-NP_011967.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:44981-56215:- | gene-YHR099W_SA1 | rna-NM_001179229.1_SA1 | cds-NP_011967.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:291156-302390:+ | gene-YHR099W_ThermosaccDry | rna-NM_001179229.1_ThermosaccDry | cds-NP_011967.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:298781-310015:+ | gene-YHR099W_VR1 | rna-NM_001179229.1_VR1 | cds-NP_011967.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:282186-293419:+ | gene-YHR099W_ZTW1 | rna-NM_001179229.1_ZTW1 | cds-NP_011967.1_ZTW1 | 99.8 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:287865-299099:+ | gene-YHR099W_Sparadoxus | rna-NM_001179229.1_Sparadoxus | cds-NP_011967.1_Sparadoxus | 90.7 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |