Gene name: TPT1
Reference locus (S288C): YOL102C
Gene biotype: protein_coding
Description: tRNA 2'-phosphotransferase that catalyzes final step in tRNA splicing: the transfer of the 2'-PO(4) from the splice junction to NAD(+) to form ADP-ribose 1''-2''cyclic phosphate and nicotinamide
Top 10 interactors (score): TRL1 (0.942); SEN34 (0.92); CPD1 (0.9); SEN2 (0.896); SEN54 (0.782); SEN15 (0.78); MSM1 (0.691); OSW7 (0.672); SDD3 (0.66); PET117 (0.658); MSD1 (0.65); POA1 (0.643); HHT1 (0.614); MTG2 (0.608); MSE1 (0.599); FMP46 (0.592); MRPL28 (0.591); TRM5 (0.588); BCS1 (0.587); MNE1 (0.586)
Homologues (species, bitscore): TRPT1 (Homo sapiens, 118.2); Trpt1 (Mus musculus, 104.8); trpt1 (Danio rerio, 119.0); trpt1 (Xenopus tropicalis, 94.7); CG33057 (Drosophila melanogaster, 83.2); emb1067 (Arabidopsis thaliana, 94.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:109314-110006:- | gene-YOL102C_AKU4011 | rna-NM_001183356.1_AKU4011 | cds-NP_014539.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:74357-75049:- | gene-YOL102C_BG1 | rna-NM_001183356.1_BG1 | cds-NP_014539.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:110895-111587:- | gene-YOL102C_Bruggeman | rna-NM_001183356.1_Bruggeman | cds-NP_014539.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:109769-110461:- | gene-YOL102C_CAT1 | rna-NM_001183356.1_CAT1 | cds-NP_014539.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:103753-104445:- | gene-YOL102C_CBS1585 | rna-NM_001183356.1_CBS1585 | cds-NP_014539.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:109033-109725:- | gene-YOL102C_CBS436 | rna-NM_001183356.1_CBS436 | cds-NP_014539.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:103915-104607:- | gene-YOL102C_CBS6412 | rna-NM_001183356.1_CBS6412 | cds-NP_014539.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:110616-111308:- | gene-YOL102C_CBS6413 | rna-NM_001183356.1_CBS6413 | cds-NP_014539.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:119961-120653:- | gene-YOL102C_CENPK1137D | rna-NM_001183356.1_CENPK1137D | cds-NP_014539.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:106917-107609:- | gene-YOL102C_EthanolRed | rna-NM_001183356.1_EthanolRed | cds-NP_014539.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:109244-109936:- | gene-YOL102C_FaliES1 | rna-NM_001183356.1_FaliES1 | cds-NP_014539.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000160.1:33533-34225:+ | gene-YOL102C_JAY291 | rna-NM_001183356.1_JAY291 | cds-NP_014539.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:115099-115791:- | gene-YOL102C_MUCL30387 | rna-NM_001183356.1_MUCL30387 | cds-NP_014539.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:118282-118974:- | gene-YOL102C_MUCL30388 | rna-NM_001183356.1_MUCL30388 | cds-NP_014539.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:111675-112367:- | gene-YOL102C_MUCL39482 | rna-NM_001183356.1_MUCL39482 | cds-NP_014539.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:127447-128139:- | gene-YOL102C_MUCL42920 | rna-NM_001183356.1_MUCL42920 | cds-NP_014539.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:125886-126578:- | gene-YOL102C_NCIM3186 | rna-NM_001183356.1_NCIM3186 | cds-NP_014539.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:118271-118963:- | gene-YOL102C_NCYC1407 | rna-NM_001183356.1_NCYC1407 | cds-NP_014539.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:101571-102263:- | gene-YOL102C_PE2H3 | rna-NM_001183356.1_PE2H3 | cds-NP_014539.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:112548-113240:- | gene-YOL102C_PE2H4 | rna-NM_001183356.1_PE2H4 | cds-NP_014539.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:125997-126689:- | gene-YOL102C_S288C | rna-NM_001183356.1_S288C | cds-NP_014539.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:93868-94560:- | gene-YOL102C_SA1 | rna-NM_001183356.1_SA1 | cds-NP_014539.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:108252-108944:- | gene-YOL102C_ThermosaccDry | rna-NM_001183356.1_ThermosaccDry | cds-NP_014539.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:108818-109510:- | gene-YOL102C_VR1 | rna-NM_001183356.1_VR1 | cds-NP_014539.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:107953-108645:- | gene-YOL102C_ZTW1 | rna-NM_001183356.1_ZTW1 | cds-NP_014539.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:111376-112068:- | gene-YOL102C_Sparadoxus | rna-NM_001183356.1_Sparadoxus | cds-NP_014539.1_Sparadoxus | 88.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |